metagRoot: A comprehensive database of protein families associated with plant root microbiomes Maria N Chasapi, Iro N Chasapi, Eleni Aplakidou, Fotis A Baltoumas, Evangelos Karatzas, Ioannis Iliopoulos, Dimitrios J Stravopodis, Ioannis Z Emiris, Aydin Buluc, Ilias Georgakopoulos Soares, Nikos Kyrpides, Georgios A Pavlopoulos
bioRxiv 2025.05.22.653656; doi: 10.1101/2025.05.22.653656

Unraveling the functional dark matter through global metagenomics Georgios A. Pavlopoulos, Fotis A. Baltoumas, Shuo Liu, Ourania Selvitopi, Ana P. Camargo, Sergio Nayfach, Abhishek Azad, Simon Roux, Lauren Call, Natalia N. Ivanova, Irene M. Chen, Daria Paez-Espino, Evangelos Karatzas; Novel Metagenome Protein Families Consortium; Ioannis Iliopoulos, Konstantinos Konstantinidis, James M. Tiedje, Jennifer Pett-Ridge, David Baker, Axel Visel, Christos A. Ouzounis, Sergey Ovchinnikov, Aydın Buluç, Nikos C. Kyrpides
Nature. 2023 Oct 11;622(7983):594–602; doi: 10.1038/s41586-023-06583-7; PMID: 37821698; PMCID: PMC10584684

NMPFamsDB: A database of novel protein families from microbial metagenomes and metatranscriptomes Fotis A. Baltoumas, Evangelos Karatzas, Shuo Liu, Sergey Ovchinnikov, Yannis Sofianatos, Irene M. Chen, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Nucleic Acids Res. 2023 Oct 9;52(D1):D502–D512; doi: 10.1093/nar/gkad800; PMID: 37811892; PMCID: PMC10767849