F320653

General Info

Members Datasets Scaffolds Average Seq Length
210 188 175 251

Family's Representative Sequence

Representative Sequence 3300041451|Ga0451791_1591210|Ga0451791_1591210_25_828
Length 267
Sequence MNTSNGLVDLHCHLDLYPDHQAAVMDAEEAGVLTLAVTTTPRAWPRNHKLAQRTKHVRAALGLHPQLVAERASEIELWDRYLPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLQRCAEAGDKIITVHSVRAAKAVLDHVESFLPPSRGKLVLHWFTGSKAEAQRALELGCYFSINAAMLENERHAPTVALIPLDRLLTETDGPFTKTGERPSKPADVAVVVEALGRLHGMSTSAVAATIRANLRALLESNGGTKSDPLRSSGVASS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2509276019 Ensifer aridi TW10 Isolate Nodule
3 2513237102 Bradyrhizobium japonicum USDA 135 Isolate Nodule
4 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
5 2643221662 Devosia sp. Root413D1 Isolate Unclassified
6 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
7 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
8 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
9 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
10 2791355196 Bradyrhizobium sp. Y36 Isolate Nodule
11 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
12 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
13 2869285874 Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 Isolate Nodule
14 2871429161 Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 Isolate Nodule
15 2874628541 Bradyrhizobium betae Opo-243 Isolate Unclassified
16 2878745973 Mesorhizobium sp. M2D.F.Ca.ET.226.01.1.1 Isolate Nodule
17 2879083081 Bradyrhizobium zhanjiangense CCBAU 51787 Isolate Unclassified
18 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
19 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
20 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
21 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
22 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
23 2906308376 Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 Isolate Nodule
24 2906321335 Mesorhizobium sp. M2D.F.Ca.ET.206.01.1.1 Isolate Nodule
25 2931369376 Pseudomonas fluorescens DR133 Isolate Rhizosphere
26 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
27 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
28 2958130278 Mesorhizobium sp. M2D.F.Ca.ET.148.01.1.1 Isolate Nodule
29 2958179912 Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 Isolate Nodule
30 2960631154 Sinorhizobium medicae USDA1629 Isolate Nodule
31 2961077736 Mesorhizobium sp. M2D.F.Ca.ET.178.01.1.1 Isolate Nodule
32 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
33 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
34 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
35 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
36 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
37 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
38 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
39 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
40 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
41 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
42 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
43 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
44 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
45 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
46 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
47 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
48 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
49 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
50 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
51 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
52 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
53 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
54 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
55 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
56 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
57 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
58 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
59 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
60 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
61 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
62 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
63 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
64 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
65 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
66 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
67 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
68 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
69 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
70 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
71 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
72 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
73 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
74 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
75 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
76 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
77 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
78 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
79 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
85 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
86 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
88 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
89 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
108 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
109 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
110 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
111 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
112 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
113 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
114 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
115 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
116 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
117 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
118 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
119 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
120 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
121 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
122 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
123 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
124 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
125 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
126 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
127 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
128 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
129 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
130 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
131 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
132 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
133 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
134 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
135 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
136 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
137 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
138 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
139 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
140 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
141 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
142 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
143 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
146 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
147 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
148 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
149 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
150 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
151 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
152 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
153 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
154 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
159 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
163 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
164 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
166 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
167 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
168 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
169 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
170 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
171 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
172 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
173 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049850 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control Metagenome Rhizosphere
176 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
177 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
178 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
179 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
180 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
181 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
182 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
183 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
184 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
185 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
186 8004387939 Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 Isolate Nodule
187 8004714634 Mesorhizobium sp. M2D.F.Ca.ET.153.01.1.1 Isolate Nodule
188 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.33
Metatranscriptomes 0
Isolates 16.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.33
Nodule 11.43
Rhizoplane 1.9
Rhizosphere 62.86
Stem 0
Stem Tuber 0
Unclassified 10.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2933296 2162886007 Bacteria 42825
2 JGI25163J39215_1000019 3300002771 Bacteria 76007
3 JGI25164J39214_1000119 3300002772 Bacteria 75989
4 rootH1_10001211 3300003323 Bacteria 25141
5 Ga0055538_1000092 3300003751 Bacteria 75989
6 Ga0055539_1000137 3300003752 Bacteria 75989
7 Ga0055533_1000141 3300003756 Bacteria 75989
8 Ga0055525_1000185 3300003759 Bacteria 75989
9 Ga0055540_1000003 3300003792 Bacteria 428375
10 Ga0055541_1000090 3300003841 Bacteria 75989
11 Ga0065704_10070271 3300005289 Bacteria 42824
12 Ga0070670_100295023 3300005331 Bacteria 1417
13 Ga0070660_100002735 3300005339 Bacteria 12117
14 Ga0070668_100004078 3300005347 Bacteria 10820
15 Ga0070663_100000914 3300005455 Bacteria 16019
16 Ga0070681_10058134 3300005458 Bacteria 3847
17 Ga0070698_100356165 3300005471 Unclassified 1395
18 Ga0070679_100142424 3300005530 Bacteria 2376
19 Ga0070684_100031430 3300005535 Bacteria 4519
20 Ga0070665_100244723 3300005548 Bacteria 1794
21 Ga0068855_100373467 3300005563 Bacteria 1567
22 Ga0068852_100043849 3300005616 Bacteria 3795
23 Ga0068852_100623344 3300005616 Unclassified 1084
24 Ga0068860_100134407 3300005843 Bacteria 2375
25 Ga0070717_10665740 3300006028 Bacteria 945
26 Ga0075363_100000261 3300006048 Bacteria 15135
27 Ga0075432_10009704 3300006058 Bacteria 3277
28 Ga0070716_100000679 3300006173 Bacteria 14543
29 Ga0070712_100061400 3300006175 Bacteria 2655
30 Ga0070712_100479931 3300006175 Unclassified 1039
31 Ga0075430_100224575 3300006846 Unclassified 1558
32 Ga0075434_100234339 3300006871 Bacteria 1855
33 Ga0075429_100009152 3300006880 Bacteria 8599
34 Ga0075435_100111254 3300007076 Bacteria 2278
35 Ga0105251_10002856 3300009011 Bacteria 13048
36 Ga0105240_10139170 3300009093 Bacteria 2904
37 Ga0105240_10186403 3300009093 Bacteria 2443
38 Ga0105247_10075284 3300009101 Unclassified 2118
39 Ga0105243_10002940 3300009148 Bacteria 14090
40 Ga0105241_10005870 3300009174 Bacteria 9060
41 Ga0105248_10387844 3300009177 Bacteria 1573
42 Ga0105239_10113909 3300010375 Bacteria 2999
43 Ga0157378_10024958 3300013297 Bacteria 5264
44 Ga0163162_10002360 3300013306 Bacteria 17739
45 Ga0157372_10609846 3300013307 Bacteria 1272
46 Ga0182005_1008541 3300015265 Bacteria 3014
47 Ga0163161_10000646 3300017792 Bacteria 27776
48 Ga0213876_10005520 3300021384 Bacteria 6940
49 Ga0209760_100178 3300025207 Bacteria 33621
50 Ga0209784_100001 3300025224 Bacteria 3600592
51 Ga0209566_100001 3300025225 Bacteria 3600765
52 Ga0209674_100002 3300025226 Bacteria 3600592
53 Ga0209672_102364 3300025228 Bacteria 4743
54 Ga0209563_100002 3300025230 Bacteria 2045675
55 Ga0207427_100012 3300025231 Bacteria 585657
56 Ga0209437_100001 3300025233 Bacteria 2045675
57 Ga0209677_100002 3300025253 Bacteria 2045675
58 Ga0209233_1001515 3300025261 Bacteria 9113
59 Ga0209233_1022677 3300025261 Bacteria 1602
60 Ga0209565_1002929 3300025263 Bacteria 5812
61 Ga0209130_1001121 3300025284 Bacteria 19686
62 Ga0209051_1000011 3300025303 Bacteria 610828
63 Ga0209257_1001272 3300025304 Bacteria 30881
64 Ga0207710_10038446 3300025900 Unclassified 2115
65 Ga0207705_10056270 3300025909 Bacteria 2836
66 Ga0207654_10001900 3300025911 Bacteria 10842
67 Ga0207707_10045452 3300025912 Bacteria 3827
68 Ga0207695_10267990 3300025913 Bacteria 1604
69 Ga0207695_10286052 3300025913 Bacteria 1542
70 Ga0207693_10092318 3300025915 Bacteria 2373
71 Ga0207657_10003716 3300025919 Bacteria 16209
72 Ga0207652_10111062 3300025921 Bacteria 2431
73 Ga0207650_10281178 3300025925 Bacteria 1355
74 Ga0207709_10001134 3300025935 Bacteria 19451
75 Ga0207661_10334097 3300025944 Bacteria 1364
76 Ga0207667_10319058 3300025949 Bacteria 1587
77 Ga0207668_10000981 3300025972 Bacteria 17154
78 Ga0207678_10000992 3300026067 Bacteria 25874
79 Ga0207698_10003768 3300026142 Bacteria 9165
80 Ga0207428_10104062 3300027907 Bacteria 2191
81 Ga0265338_10010280 3300028800 Bacteria 11009
82 Ga0307509_10026395 3300031507 Bacteria 6478
83 Ga0307516_10239164 3300031730 Bacteria 1515
84 Ga0307413_10278663 3300031824 Bacteria 1256
85 Ga0307414_10000101 3300032004 Bacteria 62093
86 Ga0307510_10314802 3300033180 Unclassified 1023
87 Ga0373953_0040511 3300035117 Unclassified 1850
88 Ga0373955_0221896 3300035172 Unclassified 1129
89 Ga0373933_0161749 3300035724 Bacteria 1422
90 Ga0373937_0272849 3300036401 Bacteria 1597
91 Ga0373925_0006080 3300037068 Bacteria 8930
92 Ga0395899_0155386 3300037312 Bacteria 1619
93 Ga0395898_0006578 3300037466 Bacteria 12396
94 Ga0395901_0005936 3300038443 Bacteria 12367
95 Ga0436365_0792029 3300039437 Bacteria 3645
96 Ga0436365_1625446 3300039437 Bacteria 12586
97 Ga0436361_0862754 3300039447 Unclassified 1140
98 Ga0451791_1591210 3300041451 Bacteria 1021
99 Ga0451807_2704153 3300041486 Bacteria 2096
100 Ga0451577_0000017 3300042876 Bacteria 523453
101 Ga0466969_0098038 3300044656 Bacteria 1382
102 Ga0453684_0000454 3300044712 Bacteria 165525
103 Ga0453684_0076501 3300044712 Bacteria 4202
104 Ga0453684_1235945 3300044712 Unclassified 782
105 Ga0451576_0000016 3300045051 Bacteria 565050
106 Ga0495627_014738 3300046453 Bacteria 2719
107 Ga0495629_0284030 3300046459 Unclassified 1135
108 Ga0495650_0001981 3300046471 Bacteria 17997
109 Ga0495585_0000460 3300046492 Bacteria 38920
110 Ga0495610_0000226 3300046512 Bacteria 60137
111 Ga0495616_0000586 3300046513 Bacteria 27352
112 Ga0495618_0145901 3300046514 Bacteria 1513
113 Ga0495637_0005692 3300046520 Bacteria 6321
114 Ga0495648_0046356 3300046524 Bacteria 2695
115 Ga0495597_0089641 3300046542 Bacteria 1307
116 Ga0495668_0006161 3300046616 Bacteria 7937
117 Ga0495661_0054456 3300046665 Bacteria 2402
118 Ga0495588_0038402 3300046674 Unclassified 2435
119 Ga0495613_0189993 3300046689 Unclassified 1452
120 Ga0495676_0000007 3300047321 Bacteria 276148
121 Ga0495683_0089288 3300047323 Bacteria 1495
122 Ga0495673_0029069 3300047469 Bacteria 2612
123 Ga0495684_0312231 3300047471 Unclassified 1126
124 Ga0496104_0000824 3300048907 Bacteria 26718
125 Ga0496105_0000078 3300048908 Bacteria 74087
126 Ga0496121_0008742 3300048924 Bacteria 11815
127 Ga0496124_0004755 3300048927 Bacteria 15640
128 Ga0496124_0004815 3300048927 Bacteria 15537
129 Ga0496125_0029733 3300048928 Bacteria 4903
130 Ga0496126_0043379 3300048929 Unclassified 4149
131 Ga0501031_0000005 3300049568 Bacteria 183960
132 Ga0501032_0000049 3300049569 Bacteria 105967
133 Ga0501033_0000129 3300049570 Bacteria 73102
134 Ga0501033_0011424 3300049570 Bacteria 6796
135 Ga0501034_0000560 3300049571 Bacteria 58880
136 Ga0501036_0000014 3300049572 Bacteria 148705
137 Ga0501037_0000042 3300049573 Bacteria 118407
138 Ga0501037_0014089 3300049573 Bacteria 5890
139 Ga0501038_0000024 3300049574 Bacteria 148705
140 Ga0501038_0000837 3300049574 Bacteria 27392
141 Ga0501038_0163528 3300049574 Bacteria 1807
142 Ga0501039_0000052 3300049575 Bacteria 95038
143 Ga0501039_0013584 3300049575 Bacteria 6228
144 Ga0501040_0011026 3300049576 Bacteria 5909
145 Ga0501043_0005947 3300049579 Bacteria 9813
146 Ga0501043_0028911 3300049579 Bacteria 4351
147 Ga0501047_0014556 3300049581 Bacteria 7484
148 Ga0501047_0035074 3300049581 Bacteria 4845
149 Ga0501047_0331926 3300049581 Bacteria 1359
150 Ga0501068_0002646 3300049584 Bacteria 9489
151 Ga0501070_0051408 3300049586 Bacteria 3421
152 Ga0501070_0589754 3300049586 Bacteria 887
153 Ga0501073_0000451 3300049589 Bacteria 28450
154 Ga0501074_0031326 3300049590 Bacteria 3853
155 Ga0501198_001511 3300049649 Bacteria 3056
156 Ga0501227_010693 3300049665 Bacteria 1992
157 Ga0501249_000658 3300049679 Bacteria 7889
158 Ga0501249_003945 3300049679 Bacteria 3002
159 Ga0501035_0000045 3300049822 Bacteria 148705
160 Ga0501044_0000044 3300049823 Bacteria 148705
161 Ga0501044_0003601 3300049823 Bacteria 17438
162 Ga0501044_0006368 3300049823 Bacteria 13048
163 Ga0501045_0247131 3300049824 Bacteria 1328
164 Ga0501204_000330 3300049850 Bacteria 3992
165 nmdc:mga03n38_39_c1 3300050490 Bacteria 28261
166 nmdc:mga05p37_7370_c1 3300050507 Bacteria 11065
167 nmdc:mga09592_7286_c1 3300050508 Bacteria 8988
168 nmdc:mga0qj67_315891_c1 3300050509 Unclassified 1265
169 nmdc:mga0n895_41497_c1 3300050512 Bacteria 4474
170 Ga0495619_0069813 3300053085 Bacteria 2349
171 Ga0495619_0131012 3300053085 Bacteria 1723
172 Ga0500618_016904 3300053125 Bacteria 1820
173 Ga0500652_013591 3300053131 Bacteria 2887
174 Ga0500616_0000179 3300053153 Bacteria 106124
175 Ga0590071_028963 3300059421 Unclassified 1316

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300033180 Ga0307510_10314802 Ga0307510_103148021 226
2 3300025284 Ga0209130_1001121 Ga0209130_10011214 227
3 3300025263 Ga0209565_1002929 Ga0209565_10029294 228
4 3300048929 Ga0496126_0043379 Ga0496126_0043379_295_981 228
5 3300053085 Ga0495619_0069813 Ga0495619_0069813_1627_2337 228
6 3300013297 Ga0157378_10024958 Ga0157378_100249585 229
7 iso_pu_bacteria 2904615490 2904625066 233
8 3300047323 Ga0495683_0089288 Ga0495683_0089288_367_1077 236
9 3300006173 Ga0070716_100000679 Ga0070716_10000067913 239
10 3300049823 Ga0501044_0006368 Ga0501044_0006368_5631_6413 240
11 iso_pu_bacteria 2513237102 2513706152 241
12 iso_pu_bacteria 2791355196 2793062874 241
13 iso_pu_bacteria 2841949485 2841957439 241
14 iso_pu_bacteria 2885409591 2885409770 241
15 3300049573 Ga0501037_0014089 Ga0501037_0014089_283_1035 242
16 3300049575 Ga0501039_0013584 Ga0501039_0013584_5392_6144 242
17 3300049665 Ga0501227_010693 Ga0501227_010693_625_1356 242
18 3300009011 Ga0105251_10002856 Ga0105251_100028564 243
19 3300046471 Ga0495650_0001981 Ga0495650_0001981_13469_14209 243
20 iso_pu_bacteria 2671180139 2671692453 244
21 iso_pu_bacteria 2957430029 2957430798 244
22 iso_pu_bacteria 2970061556 2970064644 244
23 3300005535 Ga0070684_100031430 Ga0070684_1000314302 245
24 3300009093 Ga0105240_10139170 Ga0105240_101391704 245
25 3300025261 Ga0209233_1022677 Ga0209233_10226772 245
26 3300025913 Ga0207695_10286052 Ga0207695_102860522 245
27 3300025944 Ga0207661_10334097 Ga0207661_103340972 245
28 iso_pu_bacteria 2524023228 2524541747 245
29 iso_pu_bacteria 2791355082 2792583280 245
30 iso_pu_bacteria 2874628541 2874635651 246
31 3300005339 Ga0070660_100002735 Ga0070660_1000027355 247
32 3300005455 Ga0070663_100000914 Ga0070663_10000091410 247
33 3300005563 Ga0068855_100373467 Ga0068855_1003734672 247
34 3300005616 Ga0068852_100043849 Ga0068852_1000438493 247
35 3300005616 Ga0068852_100623344 Ga0068852_1006233442 247
36 3300009093 Ga0105240_10186403 Ga0105240_101864032 247
37 3300025909 Ga0207705_10056270 Ga0207705_100562703 247
38 3300025913 Ga0207695_10267990 Ga0207695_102679902 247
39 3300025919 Ga0207657_10003716 Ga0207657_100037168 247
40 3300025949 Ga0207667_10319058 Ga0207667_103190582 247
41 3300026067 Ga0207678_10000992 Ga0207678_100009928 247
42 3300026142 Ga0207698_10003768 Ga0207698_100037689 247
43 3300039447 Ga0436361_0862754 Ga0436361_0862754_307_1077 247
44 iso_pu_bacteria 2509276019 2509379656 247
45 iso_pu_bacteria 2738543031 2739348797 247
46 iso_pu_bacteria 2842509118 2842512416 247
47 iso_pu_bacteria 2869285874 2869287182 247
48 iso_pu_bacteria 2871429161 2871430922 247
49 iso_pu_bacteria 2878745973 2878747554 247
50 iso_pu_bacteria 2894510363 2894513154 247
51 iso_pu_bacteria 2903492973 2903503471 247
52 iso_pu_bacteria 2906308376 2906309731 247
53 iso_pu_bacteria 2906321335 2906322806 247
54 iso_pu_bacteria 2958041894 2958053321 247
55 iso_pu_bacteria 2958130278 2958131581 247
56 iso_pu_bacteria 2958179912 2958181602 247
57 iso_pu_bacteria 2960631154 2960637301 247
58 iso_pu_bacteria 2961077736 2961079441 247
59 iso_pu_bacteria 8004387939 8004388898 247
60 iso_pu_bacteria 8004714634 8004715986 247
61 3300032004 Ga0307414_10000101 Ga0307414_1000010121 248
62 3300046520 Ga0495637_0005692 Ga0495637_0005692_952_1698 248
63 3300049574 Ga0501038_0163528 Ga0501038_0163528_13_762 248
64 3300049584 Ga0501068_0002646 Ga0501068_0002646_4282_5031 248
65 3300049589 Ga0501073_0000451 Ga0501073_0000451_10985_11734 248
66 3300049590 Ga0501074_0031326 Ga0501074_0031326_1807_2556 248
67 iso_pu_bacteria 2879083081 2879090428 248
68 3300003323 rootH1_10001211 rootH1_1000121110 249
69 3300005458 Ga0070681_10058134 Ga0070681_100581342 249
70 3300005530 Ga0070679_100142424 Ga0070679_1001424242 249
71 3300006028 Ga0070717_10665740 Ga0070717_106657402 249
72 3300006175 Ga0070712_100061400 Ga0070712_1000614002 249
73 3300006846 Ga0075430_100224575 Ga0075430_1002245752 249
74 3300006871 Ga0075434_100234339 Ga0075434_1002343391 249
75 3300006880 Ga0075429_100009152 Ga0075429_1000091523 249
76 3300007076 Ga0075435_100111254 Ga0075435_1001112541 249
77 3300009148 Ga0105243_10002940 Ga0105243_1000294010 249
78 3300010375 Ga0105239_10113909 Ga0105239_101139092 249
79 3300013307 Ga0157372_10609846 Ga0157372_106098462 249
80 3300021384 Ga0213876_10005520 Ga0213876_100055204 249
81 3300025912 Ga0207707_10045452 Ga0207707_100454522 249
82 3300025915 Ga0207693_10092318 Ga0207693_100923183 249
83 3300025921 Ga0207652_10111062 Ga0207652_101110622 249
84 3300025935 Ga0207709_10001134 Ga0207709_100011342 249
85 3300031507 Ga0307509_10026395 Ga0307509_100263953 249
86 3300031730 Ga0307516_10239164 Ga0307516_102391642 249
87 3300035117 Ga0373953_0040511 Ga0373953_0040511_946_1719 249
88 3300035172 Ga0373955_0221896 Ga0373955_0221896_241_1014 249
89 3300035724 Ga0373933_0161749 Ga0373933_0161749_16_789 249
90 3300036401 Ga0373937_0272849 Ga0373937_0272849_152_925 249
91 3300037068 Ga0373925_0006080 Ga0373925_0006080_570_1349 249
92 3300037312 Ga0395899_0155386 Ga0395899_0155386_173_922 249
93 3300037466 Ga0395898_0006578 Ga0395898_0006578_6961_7710 249
94 3300038443 Ga0395901_0005936 Ga0395901_0005936_6962_7711 249
95 3300039437 Ga0436365_1625446 Ga0436365_1625446_8329_9087 249
96 3300044712 Ga0453684_0076501 Ga0453684_0076501_2149_2898 249
97 3300044712 Ga0453684_1235945 Ga0453684_1235945_13_762 249
98 3300046459 Ga0495629_0284030 Ga0495629_0284030_206_955 249
99 3300046514 Ga0495618_0145901 Ga0495618_0145901_746_1495 249
100 3300046665 Ga0495661_0054456 Ga0495661_0054456_1162_1914 249
101 3300046689 Ga0495613_0189993 Ga0495613_0189993_366_1115 249
102 3300047471 Ga0495684_0312231 Ga0495684_0312231_121_870 249
103 3300048907 Ga0496104_0000824 Ga0496104_0000824_1722_2474 249
104 3300048908 Ga0496105_0000078 Ga0496105_0000078_1772_2524 249
105 3300048927 Ga0496124_0004815 Ga0496124_0004815_12406_13155 249
106 3300049568 Ga0501031_0000005 Ga0501031_0000005_78561_79313 249
107 3300049569 Ga0501032_0000049 Ga0501032_0000049_44020_44772 249
108 3300049570 Ga0501033_0000129 Ga0501033_0000129_816_1568 249
109 3300049571 Ga0501034_0000560 Ga0501034_0000560_57064_57816 249
110 3300049572 Ga0501036_0000014 Ga0501036_0000014_103934_104686 249
111 3300049573 Ga0501037_0000042 Ga0501037_0000042_73636_74388 249
112 3300049574 Ga0501038_0000024 Ga0501038_0000024_103934_104686 249
113 3300049575 Ga0501039_0000052 Ga0501039_0000052_50267_51019 249
114 3300049576 Ga0501040_0011026 Ga0501040_0011026_3716_4468 249
115 3300049579 Ga0501043_0005947 Ga0501043_0005947_4197_4949 249
116 3300049581 Ga0501047_0035074 Ga0501047_0035074_843_1595 249
117 3300049581 Ga0501047_0331926 Ga0501047_0331926_18_767 249
118 3300049586 Ga0501070_0051408 Ga0501070_0051408_2230_2982 249
119 3300049649 Ga0501198_001511 Ga0501198_001511_1850_2602 249
120 3300049679 Ga0501249_000658 Ga0501249_000658_5607_6359 249
121 3300049679 Ga0501249_003945 Ga0501249_003945_163_912 249
122 3300049822 Ga0501035_0000045 Ga0501035_0000045_44020_44772 249
123 3300049823 Ga0501044_0000044 Ga0501044_0000044_103934_104686 249
124 3300049824 Ga0501045_0247131 Ga0501045_0247131_482_1234 249
125 3300049850 Ga0501204_000330 Ga0501204_000330_1330_2082 249
126 3300050507 nmdc:mga05p37_7370_c1 nmdc:mga05p37_7370_c1_3645_4394 249
127 3300050508 nmdc:mga09592_7286_c1 nmdc:mga09592_7286_c1_1754_2503 249
128 3300050509 nmdc:mga0qj67_315891_c1 nmdc:mga0qj67_315891_c1_366_1115 249
129 3300053085 Ga0495619_0131012 Ga0495619_0131012_803_1552 249
130 3300059421 Ga0590071_028963 Ga0590071_028963_497_1246 249
131 iso_pu_bacteria 2643221662 2644350200 249
132 iso_pu_bacteria 2964628898 2964629765 249
133 iso_pu_bacteria 8018127388 8018134460 249
134 3300005331 Ga0070670_100295023 Ga0070670_1002950232 250
135 3300005347 Ga0070668_100004078 Ga0070668_1000040789 250
136 3300006048 Ga0075363_100000261 Ga0075363_1000002614 250
137 3300025925 Ga0207650_10281178 Ga0207650_102811782 250
138 3300025972 Ga0207668_10000981 Ga0207668_100009818 250
139 3300028800 Ga0265338_10010280 Ga0265338_100102802 250
140 3300044712 Ga0453684_0000454 Ga0453684_0000454_118065_118820 250
141 3300045051 Ga0451576_0000016 Ga0451576_0000016_379098_379853 250
142 3300049823 Ga0501044_0003601 Ga0501044_0003601_13034_13786 250
143 3300050490 nmdc:mga03n38_39_c1 nmdc:mga03n38_39_c1_3705_4460 250
144 3300050512 nmdc:mga0n895_41497_c1 nmdc:mga0n895_41497_c1_1510_2268 250
145 3300053131 Ga0500652_013591 Ga0500652_013591_823_1593 250
146 3300005843 Ga0068860_100134407 Ga0068860_1001344072 251
147 3300009174 Ga0105241_10005870 Ga0105241_100058706 251
148 3300025911 Ga0207654_10001900 Ga0207654_100019003 251
149 3300041451 Ga0451791_1591210 Ga0451791_1591210_25_828 251
150 3300041486 Ga0451807_2704153 Ga0451807_2704153_354_1157 251
151 3300042876 Ga0451577_0000017 Ga0451577_0000017_71395_72150 251
152 3300044656 Ga0466969_0098038 Ga0466969_0098038_516_1319 251
153 3300046513 Ga0495616_0000586 Ga0495616_0000586_2000_2773 251
154 3300046524 Ga0495648_0046356 Ga0495648_0046356_1198_1965 251
155 3300046542 Ga0495597_0089641 Ga0495597_0089641_244_1044 251
156 3300046674 Ga0495588_0038402 Ga0495588_0038402_737_1537 251
157 3300047321 Ga0495676_0000007 Ga0495676_0000007_177196_177996 251
158 3300048924 Ga0496121_0008742 Ga0496121_0008742_4286_5065 251
159 3300048928 Ga0496125_0029733 Ga0496125_0029733_1159_1959 251
160 3300049586 Ga0501070_0589754 Ga0501070_0589754_86_844 251
161 iso_pu_bacteria 2791355137 2792841263 251
162 iso_pu_bacteria 2885383462 2885389039 251
163 iso_pu_bacteria 2931369376 2931375339 251
164 3300005471 Ga0070698_100356165 Ga0070698_1003561652 252
165 3300005548 Ga0070665_100244723 Ga0070665_1002447231 252
166 3300009177 Ga0105248_10387844 Ga0105248_103878442 252
167 3300049570 Ga0501033_0011424 Ga0501033_0011424_1291_2091 252
168 3300053153 Ga0500616_0000179 Ga0500616_0000179_84308_85081 252
169 3300003792 Ga0055540_1000003 Ga0055540_100000351 253
170 3300025303 Ga0209051_1000011 Ga0209051_1000011545 253
171 3300025304 Ga0209257_1001272 Ga0209257_10012727 253
172 3300048927 Ga0496124_0004755 Ga0496124_0004755_3168_3932 253
173 3300049574 Ga0501038_0000837 Ga0501038_0000837_20414_21175 253
174 3300049579 Ga0501043_0028911 Ga0501043_0028911_1228_1992 253
175 3300049581 Ga0501047_0014556 Ga0501047_0014556_2355_3119 253
176 3300006058 Ga0075432_10009704 Ga0075432_100097041 254
177 3300006175 Ga0070712_100479931 Ga0070712_1004799312 254
178 3300013306 Ga0163162_10002360 Ga0163162_100023607 254
179 3300015265 Ga0182005_1008541 Ga0182005_10085414 254
180 3300025228 Ga0209672_102364 Ga0209672_1023643 254
181 3300027907 Ga0207428_10104062 Ga0207428_101040622 254
182 3300039437 Ga0436365_0792029 Ga0436365_0792029_56_823 254
183 3300046492 Ga0495585_0000460 Ga0495585_0000460_6970_7737 254
184 3300046512 Ga0495610_0000226 Ga0495610_0000226_35069_35836 254
185 3300046616 Ga0495668_0006161 Ga0495668_0006161_3955_4719 254
186 3300047469 Ga0495673_0029069 Ga0495673_0029069_1735_2502 254
187 2162886007 SwRhRL2b_contig_2933296 SwRhRL2b_0711.00002220 255
188 3300002771 JGI25163J39215_1000019 JGI25163J39215_100001980 255
189 3300002772 JGI25164J39214_1000119 JGI25164J39214_100011980 255
190 3300003751 Ga0055538_1000092 Ga0055538_100009280 255
191 3300003752 Ga0055539_1000137 Ga0055539_10001374 255
192 3300003756 Ga0055533_1000141 Ga0055533_100014180 255
193 3300003759 Ga0055525_1000185 Ga0055525_10001854 255
194 3300003841 Ga0055541_1000090 Ga0055541_100009080 255
195 3300005289 Ga0065704_10070271 Ga0065704_1007027134 255
196 3300009101 Ga0105247_10075284 Ga0105247_100752842 255
197 3300017792 Ga0163161_10000646 Ga0163161_100006467 255
198 3300025207 Ga0209760_100178 Ga0209760_10017822 255
199 3300025224 Ga0209784_100001 Ga0209784_1000012317 255
200 3300025225 Ga0209566_100001 Ga0209566_1000012317 255
201 3300025226 Ga0209674_100002 Ga0209674_1000022317 255
202 3300025230 Ga0209563_100002 Ga0209563_100002852 255
203 3300025231 Ga0207427_100012 Ga0207427_100012499 255
204 3300025233 Ga0209437_100001 Ga0209437_100001852 255
205 3300025253 Ga0209677_100002 Ga0209677_100002852 255
206 3300025261 Ga0209233_1001515 Ga0209233_10015152 255
207 3300025900 Ga0207710_10038446 Ga0207710_100384462 255
208 3300031824 Ga0307413_10278663 Ga0307413_102786632 255
209 3300046453 Ga0495627_014738 Ga0495627_014738_1219_1992 255
210 3300053125 Ga0500618_016904 Ga0500618_016904_1009_1779 255

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01026

TatD_DNase

TatD related DNase

8

249

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gg7-assembly1.cif.gz_A crystal structure of an uncharacterized metalloprotein from deinococcus radiodurans 0.9677 11 253
3gg7-assembly1.cif.gz_A crystal structure of an uncharacterized metalloprotein from deinococcus radiodurans 0.956 11 253
1zzm-assembly1.cif.gz_A crystal structure of yjjv, tatd homolog from escherichia coli k12, at 1.8 a resolution 0.8785 10 253
1yix-assembly2.cif.gz_B crystal structure of ycfh, tatd homolog from escherichia coli k12, at 1.9 a resolution 0.878 11 254
2y1h-assembly1.cif.gz_A crystal structure of the human tatd-domain protein 3 (tatdn3) 0.8767 11 253
ID Description Score Start End Superfamily
3gg7A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9677 11 253 3.20.20.140
3gg7A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.956 11 253 3.20.20.140
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8937 10 255 3.20.20.140
af_I1MNS0_5_296_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8826 13 246 3.20.20.140
af_Q503T5_2_266_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8825 8 253 3.20.20.140
ID Description Score Start End GO Terms
AF-M6VQ09-F1-model_v4 Hydrolase, TatD family 0.9938 11 252 GO:0016788
GO:0046872
AF-A0A841GGT3-F1-model_v4 deleted 0.9926 11 173
AF-A0A531KGV8-F1-model_v4 TatD family deoxyribonuclease 0.9917 81 252 GO:0016788
AF-A0A1G9IT47-F1-model_v4 TatD DNase family protein 0.9913 37 252 GO:0016788
GO:0046872
AF-A0A532AMK9-F1-model_v4 TatD family deoxyribonuclease 0.9893 43 185 GO:0016788

Feature Viewer

pLDDT pTM Quality
95.48 0.92 High
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Predicted Structure (AlphaFold2)

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