F276474

General Info

Members Datasets Scaffolds Average Seq Length
180 113 155 1041

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2818991438|2819554320
Length 1157
Sequence FKQAAPAKLTLDGSHEYSGGARRSAPGLDPKTAFGLAVAVLFFLASGTVAYLNVRVQRDDTRKIVHSHEVIVALNRLLSAVQDAETGQRGFLLTGRESYLDPYRGALADVGGHFEAIAGLTRDNPEQQDRLLPLRRHIDAKLAELRETIETRKSGGLEAALPLVASDRGKTEMDAIRAQLGLMQQEEARLRAERLAEMEQAYRSAWASGMASCILGIALTLAIGFLIRRAAIAAGHRQWLQSGQVALASAILGDQPVEQLGENILAFLVKFVGAQAGAVFSGDGHLFRRIAFHGVPADAGIVERFALREGLLGQVAVDGEPVLLTDIPDSYLTIGSAFGSDKPRHLLIAPAMADGAVHGVIELGFLQPVDEHVLAFLAEISNAAGVALRSARYRAELQQHAEELQVQSEELRVSNEELEEQGRALKESQVRLEHQQVELEQTNSQLEEQAQQLEHQRDDLARSNAAVELKAQELEQASRYKSDFLANMSHELRTPLNSLLILSKLLSDNPKANLTGEQVQYARTIEASGNDLLALINDILDLSKIEAGHLQIRPETVLLERLAGDMRQVFQPVARDRGLDFEIRVAPDCPATLDTDRQRLEQVLKNLLSNAFKFTETGCVRLEIEPDGASESTGTLLLSVTDTGIGIPEDQQRAIFEAFRQADGTVNRKYGGTGLGLSISRELARLLGGAISLASVPGQGSRFTLRLPLAYDPALIGSAQIKPNGPSPVATIPSPAPSAKPAPEPAVLLRQVEDDRDTATGAQRVLLVVEDDSSFAGIVRDMAREMGFQCLVAGTAEEALQLSRSFRPHAVVLDIGLPDQSGLALLDRLKRDVETRHIPVHVVSGSDHTQTALSLGAVGYLVKPVKREDLSDVLETLAARLDSPTRRVLIVEDDPVQRDAVVRLLTSGDVETVAAATAAECLELLAGQTFDCMVLDLALPDASGFTLLETLSREGGYAFPPVIVYTGHDLTADDEQRLRRYSDSIIIKGARSPERLLDEVSLFLHQVVTEMPAEQQTMIQQARNRDAILEGRRILVVEDDVRNVYSLTNILEPQGAVVEIARNGQEAIDALDRFAEDNARHIDLVLMDVMMPVKDGLTATREIRQDPRWTKLPIITLTAKAMPDDQERCIEAGANDYMSKPLDVDKLLSLVRVWMPR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
3 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
4 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
5 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
6 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
7 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
8 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
9 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
10 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
11 2751185800 Brucella pituitosa AA2 Isolate Unclassified
12 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
13 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
14 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
15 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
16 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
17 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
18 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
19 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
20 2941471342 Luteibacter sp. 621 Isolate Unclassified
21 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
22 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
23 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
24 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
25 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
26 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
27 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
28 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
29 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
30 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
31 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
34 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
35 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
36 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
37 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
38 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
48 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
69 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
70 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
71 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
72 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
73 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
74 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
75 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
76 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
77 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
78 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
79 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
80 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
81 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
82 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
83 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
84 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
93 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
94 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
95 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
96 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
97 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
98 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
106 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
107 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
110 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
111 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
112 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
113 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.11
Metatranscriptomes 0
Isolates 13.89

Biome Distribution

Category Percentage (%)
Aerial Root 1.67
Bulb 0
Endosphere 20.56
Nodule 0
Rhizoplane 3.33
Rhizosphere 42.78
Stem 0
Stem Tuber 0
Unclassified 31.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_245566 2162886007 Bacteria 4268
2 SwRhRL2b_contig_940545 2162886007 Bacteria 35775
3 Ga0055526_1001268 3300003771 Bacteria 18113
4 Ga0055537_1000489 3300003773 Bacteria 24277
5 Ga0055537_1000553 3300003773 Bacteria 21212
6 Ga0055524_1000160 3300003775 Bacteria 78345
7 Ga0055524_1000517 3300003775 Bacteria 29782
8 Ga0055536_1006371 3300003781 Bacteria 5535
9 Ga0055536_1007477 3300003781 Bacteria 4877
10 Ga0055534_1000069 3300003784 Bacteria 80193
11 Ga0055528_1000650 3300003790 Bacteria 25293
12 Ga0055530_10000692 3300003791 Bacteria 28512
13 Ga0055530_10001568 3300003791 Bacteria 16378
14 Ga0055531_10007340 3300003794 Bacteria 6042
15 Ga0055531_10008238 3300003794 Bacteria 5543
16 Ga0055531_10009753 3300003794 Bacteria 4871
17 Ga0065704_10001127 3300005289 Bacteria 10786
18 Ga0065704_10070268 3300005289 Bacteria 43398
19 Ga0070668_100003441 3300005347 Bacteria 11687
20 Ga0070669_100003046 3300005353 Bacteria 12058
21 Ga0070671_100012565 3300005355 Bacteria 6819
22 Ga0070671_100013192 3300005355 Bacteria 6656
23 Ga0070667_100000112 3300005367 Bacteria 104843
24 Ga0070667_100031434 3300005367 Bacteria 4427
25 Ga0070665_100000107 3300005548 Bacteria 156048
26 Ga0068863_100004365 3300005841 Bacteria 13943
27 Ga0068862_100005605 3300005844 Bacteria 10492
28 Ga0075364_10001397 3300006051 Bacteria 13061
29 Ga0105251_10003912 3300009011 Bacteria 10584
30 Ga0105251_10006778 3300009011 Bacteria 7228
31 Ga0105237_10020891 3300009545 Bacteria 6740
32 Ga0105239_10005184 3300010375 Bacteria 15355
33 Ga0157370_10029458 3300013104 Bacteria 5386
34 Ga0157369_10000801 3300013105 Bacteria 40212
35 Ga0182008_10012675 3300014497 Bacteria 4445
36 Ga0209565_1000033 3300025263 Bacteria 313960
37 Ga0209565_1000062 3300025263 Bacteria 184007
38 Ga0209673_1000062 3300025273 Bacteria 260727
39 Ga0209675_1000869 3300025291 Bacteria 19459
40 Ga0209676_1000095 3300025292 Bacteria 245393
41 Ga0209676_1001211 3300025292 Bacteria 27432
42 Ga0209564_1000367 3300025295 Bacteria 83971
43 Ga0209758_1010467 3300025297 Bacteria 5544
44 Ga0209758_1011967 3300025297 Bacteria 4931
45 Ga0209050_1000176 3300025298 Bacteria 146700
46 Ga0209050_1000698 3300025298 Bacteria 49870
47 Ga0209050_1000870 3300025298 Bacteria 40796
48 Ga0209256_1000045 3300025299 Bacteria 325506
49 Ga0209256_1000260 3300025299 Bacteria 93956
50 Ga0209257_1000153 3300025304 Bacteria 189177
51 Ga0209257_1001029 3300025304 Bacteria 37450
52 Ga0207713_1001568 3300025735 Bacteria 17924
53 Ga0207647_10000085 3300025904 Bacteria 71205
54 Ga0207671_10004000 3300025914 Bacteria 14322
55 Ga0207681_10001134 3300025923 Bacteria 17207
56 Ga0207644_10000736 3300025931 Bacteria 20767
57 Ga0207644_10015824 3300025931 Bacteria 5072
58 Ga0207668_10015697 3300025972 Bacteria 4711
59 Ga0207658_10000461 3300025986 Bacteria 38068
60 Ga0207641_10005769 3300026088 Bacteria 10515
61 Ga0268265_10006848 3300028380 Bacteria 7712
62 Ga0316183_1101348 3300030742 Bacteria 4677
63 Ga0307412_10000727 3300031911 Bacteria 18992
64 Ga0439432_001196 3300042006 Bacteria 9818
65 Ga0439432_002147 3300042006 Bacteria 7438
66 Ga0495627_000734 3300046453 Bacteria 24759
67 Ga0495638_0000528 3300046460 Bacteria 44566
68 Ga0495638_0001630 3300046460 Bacteria 19966
69 Ga0495650_0000565 3300046471 Bacteria 52077
70 Ga0495596_0000993 3300046500 Bacteria 16853
71 Ga0495610_0000191 3300046512 Bacteria 68582
72 Ga0495610_0000907 3300046512 Bacteria 27553
73 Ga0495610_0001056 3300046512 Bacteria 25303
74 Ga0495610_0001224 3300046512 Bacteria 23107
75 Ga0495610_0001787 3300046512 Bacteria 18784
76 Ga0495620_0012912 3300046515 Bacteria 4294
77 Ga0495631_0000189 3300046518 Bacteria 42013
78 Ga0495632_0000045 3300046519 Bacteria 140664
79 Ga0495632_0001438 3300046519 Bacteria 19836
80 Ga0495643_0000048 3300046522 Bacteria 212788
81 Ga0495643_0000986 3300046522 Bacteria 29160
82 Ga0495625_0004171 3300046660 Bacteria 13774
83 Ga0495672_0000214 3300047320 Bacteria 82882
84 Ga0495673_0000556 3300047469 Bacteria 38135
85 Ga0495681_0000014 3300047470 Bacteria 184395
86 Ga0495681_0000050 3300047470 Bacteria 109433
87 Ga0495686_0001359 3300047472 Bacteria 27282
88 Ga0495686_0005455 3300047472 Bacteria 10022
89 Ga0495615_0000428 3300048090 Bacteria 6234
90 Ga0496108_0031716 3300048911 Bacteria 4386
91 Ga0496109_0025010 3300048912 Bacteria 5316
92 Ga0496110_0019291 3300048913 Bacteria 5734
93 Ga0496113_0024268 3300048916 Bacteria 4307
94 Ga0496115_0000127 3300048918 Bacteria 68926
95 Ga0496116_0000108 3300048919 Bacteria 187993
96 Ga0496116_0021679 3300048919 Bacteria 4835
97 Ga0496117_0001460 3300048920 Bacteria 34058
98 Ga0496117_0002537 3300048920 Bacteria 22802
99 Ga0496117_0002648 3300048920 Bacteria 22192
100 Ga0496118_0001993 3300048921 Bacteria 28939
101 Ga0496118_0003061 3300048921 Bacteria 21482
102 Ga0496118_0017158 3300048921 Bacteria 6604
103 Ga0496118_0035163 3300048921 Bacteria 4074
104 Ga0496121_0000005 3300048924 Bacteria 1034486
105 Ga0496121_0000044 3300048924 Bacteria 337672
106 Ga0496121_0000105 3300048924 Bacteria 191437
107 Ga0496121_0000238 3300048924 Bacteria 118593
108 Ga0496121_0003040 3300048924 Bacteria 24355
109 Ga0496121_0023405 3300048924 Bacteria 5950
110 Ga0496122_0000514 3300048925 Bacteria 80001
111 Ga0496122_0003347 3300048925 Bacteria 21147
112 Ga0496122_0003482 3300048925 Bacteria 20704
113 Ga0496123_0000462 3300048926 Bacteria 71306
114 Ga0496123_0000630 3300048926 Bacteria 58939
115 Ga0496123_0001779 3300048926 Bacteria 28398
116 Ga0496123_0005811 3300048926 Bacteria 12244
117 Ga0496123_0009361 3300048926 Bacteria 8832
118 Ga0496124_0000054 3300048927 Bacteria 252172
119 Ga0496124_0000175 3300048927 Bacteria 128785
120 Ga0496124_0000507 3300048927 Bacteria 66974
121 Ga0496124_0001553 3300048927 Bacteria 33192
122 Ga0496124_0002416 3300048927 Bacteria 24498
123 Ga0496124_0003371 3300048927 Bacteria 19625
124 Ga0496124_0003838 3300048927 Bacteria 18005
125 Ga0496124_0012852 3300048927 Bacteria 8224
126 Ga0496124_0013705 3300048927 Bacteria 7896
127 Ga0496124_0020426 3300048927 Bacteria 6118
128 Ga0496125_0000159 3300048928 Bacteria 151205
129 Ga0496125_0002886 3300048928 Bacteria 21646
130 Ga0496125_0004875 3300048928 Bacteria 15225
131 Ga0496125_0017542 3300048928 Bacteria 6820
132 Ga0496125_0022156 3300048928 Bacteria 5904
133 Ga0496125_0024080 3300048928 Bacteria 5606
134 Ga0496125_0037846 3300048928 Bacteria 4188
135 Ga0496126_0001374 3300048929 Bacteria 38480
136 Ga0496126_0041277 3300048929 Bacteria 4271
137 Ga0496126_0044754 3300048929 Bacteria 4073
138 Ga0501033_0000005 3300049570 Bacteria 379089
139 Ga0501034_0000392 3300049571 Bacteria 74503
140 Ga0501036_0003709 3300049572 Bacteria 12241
141 Ga0501037_0001081 3300049573 Bacteria 20219
142 Ga0501038_0016567 3300049574 Bacteria 6682
143 Ga0501039_0004742 3300049575 Bacteria 10300
144 Ga0501043_0005701 3300049579 Bacteria 10033
145 Ga0501223_000019 3300049663 Bacteria 67346
146 Ga0501225_0000040 3300049705 Bacteria 43674
147 Ga0501035_0001614 3300049822 Bacteria 22790
148 Ga0501044_0002496 3300049823 Bacteria 20991
149 Ga0501045_0000117 3300049824 Bacteria 40734
150 Ga0500643_000198 3300053087 Bacteria 57293
151 Ga0500643_002075 3300053087 Bacteria 10664
152 Ga0500644_0000012 3300053088 Bacteria 117525
153 Ga0500559_0000046 3300053136 Bacteria 98853
154 Ga0500559_0001061 3300053136 Bacteria 16692
155 Ga0500559_0005579 3300053136 Bacteria 5773

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048929 Ga0496126_0044754 Ga0496126_0044754_996_4058 803
2 3300048921 Ga0496118_0017158 Ga0496118_0017158_3332_6583 854
3 3300048924 Ga0496121_0000044 Ga0496121_0000044_180413_183799 858
4 3300048921 Ga0496118_0001993 Ga0496118_0001993_23663_27043 859
5 3300046660 Ga0495625_0004171 Ga0495625_0004171_2605_5943 861
6 3300006051 Ga0075364_10001397 Ga0075364_100013972 868
7 3300048920 Ga0496117_0001460 Ga0496117_0001460_7740_11162 868
8 3300048921 Ga0496118_0035163 Ga0496118_0035163_556_3978 868
9 3300048924 Ga0496121_0000005 Ga0496121_0000005_1011063_1014485 868
10 3300048928 Ga0496125_0000159 Ga0496125_0000159_135185_138607 868
11 3300048090 Ga0495615_0000428 Ga0495615_0000428_2984_6202 869
12 3300048912 Ga0496109_0025010 Ga0496109_0025010_2278_5214 870
13 3300003781 Ga0055536_1007477 Ga0055536_10074772 871
14 3300003791 Ga0055530_10000692 Ga0055530_1000069215 871
15 3300003794 Ga0055531_10009753 Ga0055531_100097532 871
16 3300025292 Ga0209676_1000095 Ga0209676_100009563 871
17 3300025298 Ga0209050_1000698 Ga0209050_100069813 871
18 3300025304 Ga0209257_1000153 Ga0209257_1000153100 871
19 3300003781 Ga0055536_1006371 Ga0055536_10063712 881
20 3300003794 Ga0055531_10008238 Ga0055531_100082382 881
21 3300025292 Ga0209676_1001211 Ga0209676_100121111 881
22 3300025304 Ga0209257_1001029 Ga0209257_100102922 881
23 3300048927 Ga0496124_0000507 Ga0496124_0000507_38619_41954 885
24 3300013104 Ga0157370_10029458 Ga0157370_100294583 887
25 3300048926 Ga0496123_0009361 Ga0496123_0009361_5038_8409 887
26 3300013105 Ga0157369_10000801 Ga0157369_100008018 888
27 3300048928 Ga0496125_0002886 Ga0496125_0002886_5559_8984 893
28 3300009011 Ga0105251_10006778 Ga0105251_100067784 894
29 3300048927 Ga0496124_0020426 Ga0496124_0020426_1865_5242 896
30 3300048928 Ga0496125_0004875 Ga0496125_0004875_498_3875 896
31 3300025904 Ga0207647_10000085 Ga0207647_1000008536 897
32 3300048925 Ga0496122_0003347 Ga0496122_0003347_5492_8833 897
33 3300048926 Ga0496123_0001779 Ga0496123_0001779_2528_5869 897
34 iso_pu_bacteria 2884338543 2884340753 900
35 3300042006 Ga0439432_002147 Ga0439432_002147_90_3545 901
36 3300046512 Ga0495610_0001056 Ga0495610_0001056_11591_15019 901
37 3300046518 Ga0495631_0000189 Ga0495631_0000189_27420_30848 901
38 iso_pu_bacteria 2842914999 2842916560 902
39 3300005844 Ga0068862_100005605 Ga0068862_1000056055 903
40 3300028380 Ga0268265_10006848 Ga0268265_100068482 903
41 3300049570 Ga0501033_0000005 Ga0501033_0000005_30012_33434 903
42 3300053136 Ga0500559_0000046 Ga0500559_0000046_63709_67098 903
43 3300049571 Ga0501034_0000392 Ga0501034_0000392_45796_49218 904
44 3300049572 Ga0501036_0003709 Ga0501036_0003709_6482_9904 904
45 3300049573 Ga0501037_0001081 Ga0501037_0001081_15256_18678 904
46 3300049574 Ga0501038_0016567 Ga0501038_0016567_2360_5782 904
47 3300049575 Ga0501039_0004742 Ga0501039_0004742_6712_10134 904
48 3300049579 Ga0501043_0005701 Ga0501043_0005701_6313_9735 904
49 3300049823 Ga0501044_0002496 Ga0501044_0002496_5103_8525 904
50 3300049824 Ga0501045_0000117 Ga0501045_0000117_10634_14056 904
51 3300030742 Ga0316183_1101348 Ga0316183_11013484 905
52 3300005355 Ga0070671_100013192 Ga0070671_1000131922 906
53 3300005548 Ga0070665_100000107 Ga0070665_1000001076 906
54 3300025931 Ga0207644_10000736 Ga0207644_1000073615 906
55 3300048920 Ga0496117_0002537 Ga0496117_0002537_11214_14648 906
56 3300003773 Ga0055537_1000553 Ga0055537_10005538 907
57 3300025263 Ga0209565_1000062 Ga0209565_100006284 907
58 3300048918 Ga0496115_0000127 Ga0496115_0000127_54005_57436 907
59 3300025297 Ga0209758_1011967 Ga0209758_10119672 908
60 iso_pu_bacteria 8054302542 8054303377 908
61 3300047469 Ga0495673_0000556 Ga0495673_0000556_10198_13626 909
62 3300053088 Ga0500644_0000012 Ga0500644_0000012_56642_60070 909
63 3300010375 Ga0105239_10005184 Ga0105239_100051848 910
64 3300003771 Ga0055526_1001268 Ga0055526_10012686 911
65 3300003773 Ga0055537_1000489 Ga0055537_100048913 911
66 3300003784 Ga0055534_1000069 Ga0055534_100006937 911
67 3300003790 Ga0055528_1000650 Ga0055528_10006507 911
68 3300003794 Ga0055531_10007340 Ga0055531_100073404 911
69 3300014497 Ga0182008_10012675 Ga0182008_100126753 911
70 3300025263 Ga0209565_1000033 Ga0209565_1000033195 911
71 3300025273 Ga0209673_1000062 Ga0209673_100006271 911
72 3300025291 Ga0209675_1000869 Ga0209675_100086918 911
73 3300025295 Ga0209564_1000367 Ga0209564_10003675 911
74 3300042006 Ga0439432_001196 Ga0439432_001196_652_4080 911
75 3300046460 Ga0495638_0000528 Ga0495638_0000528_10802_14230 911
76 3300048920 Ga0496117_0002648 Ga0496117_0002648_8025_11453 911
77 3300048921 Ga0496118_0003061 Ga0496118_0003061_9336_12764 911
78 3300048927 Ga0496124_0003371 Ga0496124_0003371_4232_7651 911
79 3300048928 Ga0496125_0022156 Ga0496125_0022156_829_4242 911
80 3300048927 Ga0496124_0001553 Ga0496124_0001553_15762_19208 912
81 3300048927 Ga0496124_0012852 Ga0496124_0012852_3666_7094 912
82 3300049822 Ga0501035_0001614 Ga0501035_0001614_14288_17626 912
83 3300003775 Ga0055524_1000517 Ga0055524_100051725 913
84 3300025299 Ga0209256_1000260 Ga0209256_100026010 913
85 3300048928 Ga0496125_0017542 Ga0496125_0017542_1025_4456 913
86 3300047472 Ga0495686_0005455 Ga0495686_0005455_2086_5484 914
87 3300005347 Ga0070668_100003441 Ga0070668_1000034418 915
88 3300005353 Ga0070669_100003046 Ga0070669_1000030466 915
89 3300005367 Ga0070667_100031434 Ga0070667_1000314342 915
90 3300005841 Ga0068863_100004365 Ga0068863_1000043652 915
91 3300009011 Ga0105251_10003912 Ga0105251_100039122 915
92 3300025735 Ga0207713_1001568 Ga0207713_10015684 915
93 3300025923 Ga0207681_10001134 Ga0207681_100011346 915
94 3300026088 Ga0207641_10005769 Ga0207641_100057698 915
95 3300046453 Ga0495627_000734 Ga0495627_000734_15916_19305 915
96 3300046471 Ga0495650_0000565 Ga0495650_0000565_5118_8507 915
97 3300046512 Ga0495610_0000191 Ga0495610_0000191_12399_15788 915
98 3300046512 Ga0495610_0001787 Ga0495610_0001787_15313_18726 915
99 3300046515 Ga0495620_0012912 Ga0495620_0012912_287_3676 915
100 3300046522 Ga0495643_0000048 Ga0495643_0000048_186471_189884 915
101 3300047470 Ga0495681_0000014 Ga0495681_0000014_175915_179304 915
102 3300003775 Ga0055524_1000160 Ga0055524_100016040 916
103 3300025299 Ga0209256_1000045 Ga0209256_1000045113 916
104 3300025914 Ga0207671_10004000 Ga0207671_100040006 916
105 3300048924 Ga0496121_0023405 Ga0496121_0023405_1678_5136 917
106 3300048927 Ga0496124_0002416 Ga0496124_0002416_10094_13579 917
107 3300025297 Ga0209758_1010467 Ga0209758_10104673 918
108 3300053087 Ga0500643_002075 Ga0500643_002075_6563_9994 918
109 iso_pu_bacteria 2939589442 2939592819 918
110 iso_pu_bacteria 2974307012 2974310765 918
111 iso_pu_bacteria 2984514374 2984517859 918
112 3300003791 Ga0055530_10001568 Ga0055530_1000156813 919
113 3300025298 Ga0209050_1000870 Ga0209050_10008702 919
114 3300046460 Ga0495638_0001630 Ga0495638_0001630_8457_11885 919
115 3300046522 Ga0495643_0000986 Ga0495643_0000986_13526_16954 919
116 3300047320 Ga0495672_0000214 Ga0495672_0000214_19097_22525 919
117 3300047472 Ga0495686_0001359 Ga0495686_0001359_15964_19392 919
118 3300048919 Ga0496116_0021679 Ga0496116_0021679_280_3708 919
119 3300048926 Ga0496123_0005811 Ga0496123_0005811_2997_6425 919
120 3300053136 Ga0500559_0001061 Ga0500559_0001061_5216_8641 919
121 iso_pu_bacteria 2928526807 2928526964 919
122 3300048927 Ga0496124_0000175 Ga0496124_0000175_37908_41336 921
123 3300048924 Ga0496121_0000105 Ga0496121_0000105_11727_15146 922
124 iso_pu_bacteria 2599185359 2600226584 923
125 iso_pu_bacteria 2818991466 2819712453 923
126 iso_pu_bacteria 2928968154 2928969432 923
127 iso_pu_bacteria 8054302542 8054304582 923
128 3300005355 Ga0070671_100012565 Ga0070671_1000125652 924
129 3300025931 Ga0207644_10015824 Ga0207644_100158243 924
130 3300046519 Ga0495632_0000045 Ga0495632_0000045_21038_24469 924
131 3300048916 Ga0496113_0024268 Ga0496113_0024268_734_3832 924
132 3300048925 Ga0496122_0000514 Ga0496122_0000514_9989_13444 924
133 3300048926 Ga0496123_0000462 Ga0496123_0000462_10070_13525 924
134 3300048928 Ga0496125_0024080 Ga0496125_0024080_1125_4223 924
135 iso_pu_bacteria 2751185800 2753361075 924
136 3300046519 Ga0495632_0001438 Ga0495632_0001438_650_4069 925
137 iso_pu_bacteria 2510917021 2511127907 925
138 iso_pu_bacteria 2929138655 2929142879 925
139 3300048924 Ga0496121_0003040 Ga0496121_0003040_9774_13259 926
140 3300049663 Ga0501223_000019 Ga0501223_000019_16795_19893 927
141 3300049705 Ga0501225_0000040 Ga0501225_0000040_23426_26524 927
142 3300053087 Ga0500643_000198 Ga0500643_000198_53166_56609 927
143 3300053136 Ga0500559_0005579 Ga0500559_0005579_1285_4728 927
144 iso_pu_bacteria 2941471342 2941471469 927
145 iso_pu_bacteria 2990265787 2990269282 927
146 iso_pu_bacteria 2993693658 2993697375 927
147 3300009545 Ga0105237_10020891 Ga0105237_100208911 928
148 3300046512 Ga0495610_0000907 Ga0495610_0000907_4461_7892 928
149 3300047470 Ga0495681_0000050 Ga0495681_0000050_63412_66843 928
150 iso_pu_bacteria 2643221614 2644086418 928
151 iso_pu_bacteria 2643221661 2644344916 928
152 iso_pu_bacteria 2643221666 2644367659 928
153 3300025298 Ga0209050_1000176 Ga0209050_100017695 929
154 3300048913 Ga0496110_0019291 Ga0496110_0019291_831_3932 929
155 3300048925 Ga0496122_0003482 Ga0496122_0003482_12832_15933 929
156 3300048927 Ga0496124_0003838 Ga0496124_0003838_14607_17720 929
157 3300048927 Ga0496124_0013705 Ga0496124_0013705_1320_4421 929
158 3300005289 Ga0065704_10070268 Ga0065704_1007026828 930
159 3300031911 Ga0307412_10000727 Ga0307412_100007277 930
160 3300048927 Ga0496124_0000054 Ga0496124_0000054_207864_210971 930
161 2162886007 SwRhRL2b_contig_940545 SwRhRL2b_0886.00005660 931
162 3300048919 Ga0496116_0000108 Ga0496116_0000108_60560_64045 931
163 3300048926 Ga0496123_0000630 Ga0496123_0000630_47757_51242 931
164 3300046500 Ga0495596_0000993 Ga0495596_0000993_3023_6547 932
165 3300046512 Ga0495610_0001224 Ga0495610_0001224_3894_7418 932
166 3300005367 Ga0070667_100000112 Ga0070667_10000011275 933
167 3300025986 Ga0207658_10000461 Ga0207658_1000046127 933
168 3300048929 Ga0496126_0001374 Ga0496126_0001374_33036_36536 933
169 iso_pu_bacteria 2818991438 2819554320 937
170 3300025972 Ga0207668_10015697 Ga0207668_100156973 939
171 iso_pu_bacteria 2643221541 2643730318 945
172 iso_pu_bacteria 2643221606 2644043487 945
173 iso_pu_bacteria 2643221671 2644393646 945
174 iso_pu_bacteria 2512564014 2512642734 950
175 2162886007 SwRhRL2b_contig_245566 SwRhRL2b_0091.00007360 965
176 3300005289 Ga0065704_10001127 Ga0065704_100011278 965
177 3300048911 Ga0496108_0031716 Ga0496108_0031716_715_3846 965
178 3300048924 Ga0496121_0000238 Ga0496121_0000238_637_3768 965
179 3300048928 Ga0496125_0037846 Ga0496125_0037846_432_3563 965
180 3300048929 Ga0496126_0041277 Ga0496126_0041277_379_3510 965

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00512

HisKA

His Kinase A (phospho-acceptor) domain

480

548

0.98

PF05227

CHASE3

CHASE3 domain

60

197

0.98

PF00072

Response_reg

Response regulator receiver domain

1034

1152

0.94

PF00072

Response_reg

Response regulator receiver domain

766

875

0.94

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

595

711

0.93

PF13185

GAF_2

GAF domain

254

389

0.93

PF00072

Response_reg

Response regulator receiver domain

888

1001

0.92

PF01590

GAF

GAF domain

256

388

0.85

Feature Viewer

pLDDT pTM Quality
72.36 0.33 Low
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Predicted Structure (AlphaFold2)

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