F269130

General Info

Members Datasets Scaffolds Average Seq Length
176 150 138 465

Family's Representative Sequence

Representative Sequence 3300053080|Ga0500635_0023835|Ga0500635_0023835_218_1708
Length 496
Sequence MTNLFFDLLAASAADPATREDTAQLASPLGLDFIGSSSKLLSNAAYLVAGILFILALRGLSSQATARRGNLYGIIGMLIAIAATISFTAAGTHWGVIVAIGAAAVIGSTMALRVGMTSMPEMVALLHSFVGLAAVLVGFSLQIDALRVPELAERIEIFIDVWIGAITTTGSVIAFLKLRGSLSGRPLLLPGRHVFNLTMLIASIVLAGIYASDGPTWALEIGIAIACVLGVHLVSAIGGADMPVVVSMLNSYSGWTAAAAGFMLQNDLLIITGALVGSSGAILSYIMCKAMNRSIYSVIFGGFGAAPAKKPAGGPAAPAGEVQEMDAATLAATLKTSKSVVIVPGYGMAVARAQHAVRELTEVLRAAGVTVRFAIHPVAGRLPGHMNVLLAEANVPYDIVLEMDEINGDFPTTDVAIVIGANDIVNPAAEDDPTSPIAGMPVLQVWKSHLVIVNKRSRAAGYAGIDNPLFYKPNTKMLFGDAKDAIEKVVAVLKAT

Samples

Sample ID Description Type Environment
1 2551306352 Acinetobacter sp. GG2 Isolate Rhizosphere
2 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
3 2639762793 Acinetobacter calcoaceticus GK1 Isolate Rhizosphere
4 2643221665 Acinetobacter sp. Root1280 Isolate Unclassified
5 2675903507 Acinetobacter calcoaceticus GK2 Isolate Unclassified
6 2744054655 Acinetobacter sp. BMW17 Isolate Unclassified
7 2773857761 Acinetobacter sp. 3664 Isolate Unclassified
8 2773857770 Acinetobacter sp. 3636 Isolate Unclassified
9 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
10 2791355263 Rhizobium chutanense C5 Isolate Nodule
11 2837183177 Egibacter rhizosphaerae EGI 80759 Isolate Unclassified
12 2838061910 Rhizobium phaseoli L15 Isolate Nodule
13 2838729681 Rhizobium leguminosarum SEMIA 445 Isolate Nodule
14 2838742623 Rhizobium leguminosarum SEMIA 449 Isolate Nodule
15 2841851746 Rhizobium leguminosarum SEMIA 498 Isolate Nodule
16 2842229732 Rhizobium leguminosarum SEMIA 481 Isolate Nodule
17 2842243621 Rhizobium leguminosarum SEMIA 483 Isolate Nodule
18 2842257432 Rhizobium leguminosarum SEMIA 485 Isolate Nodule
19 2842264693 Rhizobium phaseoli SEMIA 487 Isolate Nodule
20 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
21 2842434925 Rhizobium esperanzae SEMIA 4051 Isolate Nodule
22 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
23 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
24 2844454524 Rhizobium leguminosarum bv. viciae BIHB 1217 Isolate Nodule
25 2847797336 Pantoea ananatis NN08200 Isolate Unclassified
26 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
27 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
28 2916699645 Acinetobacter ursingii M3 Isolate Unclassified
29 2919182534 Acinetobacter calcoaceticus 2589 Isolate Rhizosphere
30 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
31 2928515477 Acinetobacter bereziniae 1375 Isolate Rhizosphere
32 2936381700 Rhizobium chutanense C16 Isolate Unclassified
33 2984568884 Acinetobacter baylyi SORGH_AS893 Isolate Aerial Root
34 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
35 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
36 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
37 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
38 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
39 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
40 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
41 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
42 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
43 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
44 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
45 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
46 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
47 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
48 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
49 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
50 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
51 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
52 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
53 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
54 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
55 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
56 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
57 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
58 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
61 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
62 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
63 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
64 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
67 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
68 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
69 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
70 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
71 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
95 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
96 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
97 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
98 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
99 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
100 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
101 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
104 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
105 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
106 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
107 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
108 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
109 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
111 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
112 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
113 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
114 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
115 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
116 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
117 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
118 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
119 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
120 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
121 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
124 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
125 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
126 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
131 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
132 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
133 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
134 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
135 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
136 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
137 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
138 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
139 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
140 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
141 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
142 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
143 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
144 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
145 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
146 8005382845 Rhizobium sp. R634 Isolate Nodule
147 8005395548 Rhizobium sp. R339 Isolate Nodule
148 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
149 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
150 8033232454 Acinetobacter radioresistens SA188 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 77.27
Metatranscriptomes 1.14
Isolates 21.59

Biome Distribution

Category Percentage (%)
Aerial Root 0.57
Bulb 0
Endosphere 6.25
Nodule 11.36
Rhizoplane 0.57
Rhizosphere 67.05
Stem 0
Stem Tuber 0
Unclassified 14.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0058692_1000008 3300003856 Bacteria 361583
2 Ga0058692_1000418 3300003856 Bacteria 19607
3 Ga0065703_1000081 3300005272 Bacteria 31956
4 Ga0070690_100007356 3300005330 Bacteria 6304
5 Ga0068868_100044299 3300005338 Bacteria 3479
6 Ga0070689_100003739 3300005340 Bacteria 10191
7 Ga0070689_100064939 3300005340 Bacteria 2842
8 Ga0070689_100067796 3300005340 Bacteria 2782
9 Ga0070669_100006589 3300005353 Bacteria 8360
10 Ga0070669_100155127 3300005353 Bacteria 1775
11 Ga0070675_100119166 3300005354 Bacteria 2242
12 Ga0070673_100061611 3300005364 Bacteria 2977
13 Ga0070713_100176322 3300005436 Bacteria 1918
14 Ga0070678_100018579 3300005456 Bacteria 4508
15 Ga0070698_100025179 3300005471 Bacteria 6200
16 Ga0068853_100020138 3300005539 Bacteria 5546
17 Ga0070665_100005831 3300005548 Bacteria 12633
18 Ga0070665_100009067 3300005548 Bacteria 10078
19 Ga0068855_100045544 3300005563 Bacteria 5189
20 Ga0068856_100043636 3300005614 Bacteria 4412
21 Ga0068859_100199996 3300005617 Bacteria 2083
22 Ga0068858_100233438 3300005842 Bacteria 1744
23 Ga0070717_10039030 3300006028 Bacteria 3862
24 Ga0075362_10036361 3300006177 Bacteria 2154
25 Ga0075428_100064545 3300006844 Bacteria 4010
26 Ga0075431_100175115 3300006847 Bacteria 2204
27 Ga0075433_10080457 3300006852 Bacteria 2872
28 Ga0075429_100133651 3300006880 Bacteria 2170
29 Ga0097620_100199995 3300006931 Bacteria 2083
30 Ga0105244_10000086 3300009036 Bacteria 102288
31 Ga0105244_10000626 3300009036 Bacteria 31285
32 Ga0105240_10007384 3300009093 Bacteria 15985
33 Ga0105245_10000061 3300009098 Bacteria 118794
34 Ga0105243_10000041 3300009148 Bacteria 159516
35 Ga0105241_10140311 3300009174 Bacteria 1967
36 Ga0105237_10074086 3300009545 Bacteria 3396
37 Ga0105249_10000340 3300009553 Bacteria 47169
38 Ga0105249_10035347 3300009553 Bacteria 4532
39 Ga0105239_10017832 3300010375 Bacteria 7851
40 Ga0105239_10127737 3300010375 Bacteria 2826
41 Ga0157374_10043629 3300013296 Bacteria 4144
42 Ga0157374_10209777 3300013296 Bacteria 1910
43 Ga0157372_10000623 3300013307 Bacteria 38653
44 Ga0157372_10076853 3300013307 Bacteria 3770
45 Ga0157376_10111371 3300014969 Bacteria 2410
46 Ga0163161_10002211 3300017792 Bacteria 14009
47 Ga0213876_10018246 3300021384 Bacteria 3704
48 Ga0209673_1006114 3300025273 Bacteria 5903
49 Ga0209256_1013175 3300025299 Bacteria 3089
50 Ga0207655_1011243 3300025728 Bacteria 5343
51 Ga0207655_1012581 3300025728 Bacteria 4934
52 Ga0207655_1020902 3300025728 Bacteria 3344
53 Ga0207710_10000021 3300025900 Bacteria 336166
54 Ga0207707_10012132 3300025912 Bacteria 7490
55 Ga0207671_10042654 3300025914 Bacteria 3357
56 Ga0207681_10001105 3300025923 Bacteria 17471
57 Ga0207681_10040909 3300025923 Bacteria 3087
58 Ga0207687_10000080 3300025927 Bacteria 70391
59 Ga0207690_10102687 3300025932 Bacteria 2045
60 Ga0207709_10000023 3300025935 Bacteria 369407
61 Ga0207670_10015952 3300025936 Bacteria 4501
62 Ga0207670_10021659 3300025936 Bacteria 3970
63 Ga0207670_10023416 3300025936 Bacteria 3845
64 Ga0207691_10028485 3300025940 Bacteria 5231
65 Ga0207667_10129144 3300025949 Bacteria 2603
66 Ga0207712_10006298 3300025961 Bacteria 7488
67 Ga0207658_10098660 3300025986 Bacteria 2283
68 Ga0207639_10061449 3300026041 Bacteria 2902
69 Ga0207708_10018972 3300026075 Bacteria 5179
70 Ga0207702_10005819 3300026078 Bacteria 10723
71 Ga0207702_10258931 3300026078 Bacteria 1637
72 Ga0207676_10295309 3300026095 Bacteria 1477
73 Ga0207683_10035013 3300026121 Bacteria 4367
74 Ga0209371_1000038 3300027312 Bacteria 361802
75 Ga0209974_10000792 3300027876 Bacteria 10794
76 Ga0268266_10001420 3300028379 Bacteria 28612
77 Ga0268266_10027061 3300028379 Bacteria 4879
78 Ga0307517_10075190 3300028786 Bacteria 2966
79 Ga0307515_10036475 3300028794 Bacteria 7950
80 Ga0265338_10060981 3300028800 Bacteria 3309
81 Ga0268256_1000038 3300030500 Bacteria 361762
82 Ga0265332_10001289 3300031238 Bacteria 14317
83 Ga0265325_10004550 3300031241 Bacteria 8736
84 Ga0265340_10010641 3300031247 Bacteria 4917
85 Ga0265327_10008507 3300031251 Bacteria 7628
86 Ga0307513_10055342 3300031456 Bacteria 4246
87 Ga0307509_10000175 3300031507 Bacteria 100922
88 Ga0307508_10022765 3300031616 Bacteria 5696
89 Ga0316576_10050362 3300031727 Bacteria 3029
90 Ga0307405_10095386 3300031731 Bacteria 1981
91 Ga0307409_100034981 3300031995 Bacteria 3677
92 Ga0307415_100040245 3300032126 Bacteria 3095
93 Ga0316593_10006677 3300032168 Bacteria 3130
94 Ga0373936_0000044 3300035113 Bacteria 84886
95 Ga0373941_0024296 3300035115 Bacteria 1739
96 Ga0373961_0000275 3300035241 Bacteria 23149
97 Ga0395905_0000001 3300037471 Bacteria 2037079
98 Ga0395905_0000049 3300037471 Bacteria 230719
99 Ga0395901_0015439 3300038443 Bacteria 7777
100 Ga0395901_0316933 3300038443 Bacteria 1614
101 Ga0400483_042783 3300039062 Bacteria 47189
102 Ga0400483_266267 3300039062 Bacteria 25407
103 Ga0436365_1122172 3300039437 Bacteria 3932
104 Ga0451577_0025075 3300042876 Bacteria 5412
105 Ga0453684_0013100 3300044712 Bacteria 13536
106 Ga0453684_0168494 3300044712 Bacteria 2583
107 Ga0451576_0050865 3300045051 Bacteria 4345
108 Ga0495632_0067472 3300046519 Bacteria 1725
109 Ga0495645_0076761 3300046543 Bacteria 2403
110 Ga0495686_0029521 3300047472 Bacteria 3566
111 Ga0496111_0078328 3300048914 Bacteria 2410
112 Ga0496116_0000453 3300048919 Bacteria 56819
113 Ga0496124_0009758 3300048927 Bacteria 9824
114 Ga0496124_0017445 3300048927 Bacteria 6765
115 Ga0496124_0058281 3300048927 Bacteria 3249
116 Ga0501310_000013 3300049130 Bacteria 17841
117 Ga0501031_0067635 3300049568 Bacteria 2327
118 Ga0501034_0013949 3300049571 Bacteria 8272
119 Ga0501034_0041847 3300049571 Bacteria 4636
120 Ga0501047_0018917 3300049581 Bacteria 6606
121 Ga0501047_0052006 3300049581 Bacteria 3959
122 Ga0501216_001153 3300049660 Bacteria 3485
123 Ga0501227_011117 3300049665 Bacteria 1957
124 Ga0501080_0006570 3300049742 Bacteria 10448
125 Ga0501083_0003037 3300049744 Bacteria 11666
126 Ga0501044_0006778 3300049823 Bacteria 12627
127 Ga0501044_0238414 3300049823 Bacteria 1763
128 nmdc:mga09592_54558_c1 3300050508 Bacteria 3377
129 nmdc:mga0qj67_146622_c1 3300050509 Bacteria 1914
130 Ga0500635_0023835 3300053080 Bacteria 1914
131 Ga0500640_010693 3300053095 Bacteria 3715
132 Ga0500595_000097 3300053119 Bacteria 60921
133 Ga0500614_002743 3300053123 Bacteria 3883
134 Ga0500642_0062832 3300053130 Bacteria 1672
135 Ga0500616_0000237 3300053153 Bacteria 86617
136 Ga0500622_0057533 3300053156 Bacteria 1989
137 Ga0500636_0028095 3300053177 Bacteria 3323
138 Ga0501084_0036380 3300054114 Bacteria 4112

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005354 Ga0070675_100119166 Ga0070675_1001191662 415
2 3300005456 Ga0070678_100018579 Ga0070678_1000185794 415
3 3300014969 Ga0157376_10111371 Ga0157376_101113712 415
4 3300026121 Ga0207683_10035013 Ga0207683_100350132 415
5 3300031247 Ga0265340_10010641 Ga0265340_100106412 416
6 3300045051 Ga0451576_0050865 Ga0451576_0050865_147_1541 417
7 3300026095 Ga0207676_10295309 Ga0207676_102953091 421
8 iso_pu_bacteria 2841851746 2841854326 422
9 iso_pu_bacteria 2844454524 2844460775 422
10 3300031241 Ga0265325_10004550 Ga0265325_100045504 423
11 3300049660 Ga0501216_001153 Ga0501216_001153_38_1438 427
12 3300005340 Ga0070689_100064939 Ga0070689_1000649392 428
13 3300005614 Ga0068856_100043636 Ga0068856_1000436362 428
14 3300025936 Ga0207670_10023416 Ga0207670_100234162 428
15 3300026078 Ga0207702_10005819 Ga0207702_1000581911 428
16 3300010375 Ga0105239_10127737 Ga0105239_101277373 432
17 3300013307 Ga0157372_10076853 Ga0157372_100768531 432
18 3300028794 Ga0307515_10036475 Ga0307515_100364756 432
19 3300035115 Ga0373941_0024296 Ga0373941_0024296_243_1661 432
20 3300025912 Ga0207707_10012132 Ga0207707_100121323 433
21 3300031727 Ga0316576_10050362 Ga0316576_100503622 434
22 3300053095 Ga0500640_010693 Ga0500640_010693_496_1986 434
23 3300053119 Ga0500595_000097 Ga0500595_000097_54170_55660 434
24 3300053123 Ga0500614_002743 Ga0500614_002743_617_2107 434
25 3300031731 Ga0307405_10095386 Ga0307405_100953862 436
26 3300005436 Ga0070713_100176322 Ga0070713_1001763221 437
27 3300006852 Ga0075433_10080457 Ga0075433_100804572 437
28 3300028800 Ga0265338_10060981 Ga0265338_100609812 437
29 3300048914 Ga0496111_0078328 Ga0496111_0078328_853_2244 437
30 3300053177 Ga0500636_0028095 Ga0500636_0028095_1192_2604 437
31 3300049568 Ga0501031_0067635 Ga0501031_0067635_43_1443 441
32 3300049571 Ga0501034_0041847 Ga0501034_0041847_875_2275 441
33 3300035113 Ga0373936_0000044 Ga0373936_0000044_81524_82975 442
34 3300031616 Ga0307508_10022765 Ga0307508_100227653 444
35 3300005330 Ga0070690_100007356 Ga0070690_1000073562 445
36 3300005340 Ga0070689_100067796 Ga0070689_1000677962 445
37 3300009553 Ga0105249_10035347 Ga0105249_100353473 445
38 3300025936 Ga0207670_10021659 Ga0207670_100216592 445
39 3300035241 Ga0373961_0000275 Ga0373961_0000275_8273_9724 445
40 3300049130 Ga0501310_000013 Ga0501310_000013_1565_2947 445
41 3300006844 Ga0075428_100064545 Ga0075428_1000645452 447
42 3300021384 Ga0213876_10018246 Ga0213876_100182463 447
43 3300025949 Ga0207667_10129144 Ga0207667_101291442 447
44 3300039437 Ga0436365_1122172 Ga0436365_1122172_830_2230 447
45 3300027876 Ga0209974_10000792 Ga0209974_100007926 448
46 iso_pu_bacteria 2565956521 2566036650 448
47 iso_pu_bacteria 2847797336 2847801412 448
48 iso_pu_bacteria 2919688452 2919690731 448
49 3300049665 Ga0501227_011117 Ga0501227_011117_471_1871 449
50 iso_pu_bacteria 2837183177 2837184847 449
51 3300003856 Ga0058692_1000418 Ga0058692_10004182 451
52 3300032168 Ga0316593_10006677 Ga0316593_100066772 451
53 3300038443 Ga0395901_0015439 Ga0395901_0015439_3288_4679 451
54 3300039062 Ga0400483_042783 Ga0400483_042783_33022_34398 451
55 3300039062 Ga0400483_266267 Ga0400483_266267_8142_9518 451
56 3300049581 Ga0501047_0052006 Ga0501047_0052006_2280_3671 451
57 3300049823 Ga0501044_0238414 Ga0501044_0238414_291_1682 451
58 iso_pu_bacteria 2884634485 2884636881 451
59 3300005340 Ga0070689_100003739 Ga0070689_1000037393 452
60 3300005471 Ga0070698_100025179 Ga0070698_1000251793 452
61 3300006847 Ga0075431_100175115 Ga0075431_1001751152 452
62 3300006880 Ga0075429_100133651 Ga0075429_1001336512 452
63 3300009036 Ga0105244_10000626 Ga0105244_1000062623 452
64 3300009098 Ga0105245_10000061 Ga0105245_1000006195 452
65 3300025728 Ga0207655_1020902 Ga0207655_10209022 452
66 3300025927 Ga0207687_10000080 Ga0207687_100000805 452
67 3300025936 Ga0207670_10015952 Ga0207670_100159522 452
68 3300026078 Ga0207702_10258931 Ga0207702_102589311 452
69 3300038443 Ga0395901_0316933 Ga0395901_0316933_91_1488 452
70 3300048919 Ga0496116_0000453 Ga0496116_0000453_5019_6407 452
71 3300048927 Ga0496124_0009758 Ga0496124_0009758_7488_8876 452
72 3300049744 Ga0501083_0003037 Ga0501083_0003037_2246_3673 452
73 3300050508 nmdc:mga09592_54558_c1 nmdc:mga09592_54558_c1_1465_2895 452
74 3300005353 Ga0070669_100155127 Ga0070669_1001551272 453
75 3300005539 Ga0068853_100020138 Ga0068853_1000201384 453
76 3300005548 Ga0070665_100005831 Ga0070665_10000583111 453
77 3300005563 Ga0068855_100045544 Ga0068855_1000455442 453
78 3300005617 Ga0068859_100199996 Ga0068859_1001999962 453
79 3300005842 Ga0068858_100233438 Ga0068858_1002334382 453
80 3300006028 Ga0070717_10039030 Ga0070717_100390302 453
81 3300006931 Ga0097620_100199995 Ga0097620_1001999952 453
82 3300009036 Ga0105244_10000086 Ga0105244_1000008616 453
83 3300009174 Ga0105241_10140311 Ga0105241_101403112 453
84 3300009545 Ga0105237_10074086 Ga0105237_100740862 453
85 3300010375 Ga0105239_10017832 Ga0105239_100178322 453
86 3300025914 Ga0207671_10042654 Ga0207671_100426542 453
87 3300025923 Ga0207681_10040909 Ga0207681_100409092 453
88 3300025932 Ga0207690_10102687 Ga0207690_101026872 453
89 3300026041 Ga0207639_10061449 Ga0207639_100614492 453
90 3300026075 Ga0207708_10018972 Ga0207708_100189722 453
91 3300028379 Ga0268266_10001420 Ga0268266_1000142014 453
92 3300053153 Ga0500616_0000237 Ga0500616_0000237_72355_73785 453
93 3300013296 Ga0157374_10043629 Ga0157374_100436293 454
94 3300013296 Ga0157374_10209777 Ga0157374_102097772 454
95 3300025940 Ga0207691_10028485 Ga0207691_100284855 454
96 3300031507 Ga0307509_10000175 Ga0307509_1000017560 454
97 3300031995 Ga0307409_100034981 Ga0307409_1000349813 454
98 3300046543 Ga0495645_0076761 Ga0495645_0076761_109_1503 454
99 3300028786 Ga0307517_10075190 Ga0307517_100751902 455
100 3300031238 Ga0265332_10001289 Ga0265332_1000128911 455
101 3300031456 Ga0307513_10055342 Ga0307513_100553422 455
102 3300046519 Ga0495632_0067472 Ga0495632_0067472_212_1630 455
103 3300049571 Ga0501034_0013949 Ga0501034_0013949_1080_2567 455
104 3300049581 Ga0501047_0018917 Ga0501047_0018917_708_2195 455
105 3300049823 Ga0501044_0006778 Ga0501044_0006778_1072_2559 455
106 3300053080 Ga0500635_0023835 Ga0500635_0023835_218_1708 455
107 3300053130 Ga0500642_0062832 Ga0500642_0062832_31_1449 455
108 3300053156 Ga0500622_0057533 Ga0500622_0057533_484_1902 455
109 3300005338 Ga0068868_100044299 Ga0068868_1000442991 456
110 3300013307 Ga0157372_10000623 Ga0157372_1000062332 456
111 3300017792 Ga0163161_10002211 Ga0163161_100022112 456
112 3300031251 Ga0265327_10008507 Ga0265327_100085072 456
113 3300037471 Ga0395905_0000049 Ga0395905_0000049_95259_96659 456
114 3300042876 Ga0451577_0025075 Ga0451577_0025075_1532_2962 456
115 3300044712 Ga0453684_0168494 Ga0453684_0168494_772_2202 456
116 3300050509 nmdc:mga0qj67_146622_c1 nmdc:mga0qj67_146622_c1_366_1820 456
117 3300044712 Ga0453684_0013100 Ga0453684_0013100_343_1746 457
118 3300032126 Ga0307415_100040245 Ga0307415_1000402452 458
119 3300037471 Ga0395905_0000001 Ga0395905_0000001_7488_8891 458
120 3300047472 Ga0495686_0029521 Ga0495686_0029521_737_2140 458
121 3300049742 Ga0501080_0006570 Ga0501080_0006570_4850_6274 462
122 3300054114 Ga0501084_0036380 Ga0501084_0036380_311_1762 462
123 iso_pu_bacteria 2775507266 2778176649 462
124 iso_pu_bacteria 2791355263 2793344641 462
125 iso_pu_bacteria 2838061910 2838064582 462
126 iso_pu_bacteria 2838729681 2838735666 462
127 iso_pu_bacteria 2838742623 2838748568 462
128 iso_pu_bacteria 2842229732 2842232836 462
129 iso_pu_bacteria 2842243621 2842246921 462
130 iso_pu_bacteria 2842257432 2842259393 462
131 iso_pu_bacteria 2842264693 2842270078 462
132 iso_pu_bacteria 2842428310 2842433853 462
133 iso_pu_bacteria 2842434925 2842440229 462
134 iso_pu_bacteria 2842441272 2842446982 462
135 iso_pu_bacteria 2842469257 2842474837 462
136 iso_pu_bacteria 2936381700 2936388365 462
137 iso_pu_bacteria 8005382845 8005383710 462
138 iso_pu_bacteria 8005395548 8005399188 462
139 iso_pu_bacteria 8005430974 8005435912 462
140 iso_pu_bacteria 8005626139 8005629006 462
141 3300025986 Ga0207658_10098660 Ga0207658_100986602 463
142 3300025273 Ga0209673_1006114 Ga0209673_10061141 466
143 3300025299 Ga0209256_1013175 Ga0209256_10131752 466
144 3300048927 Ga0496124_0017445 Ga0496124_0017445_3015_4448 466
145 3300048927 Ga0496124_0058281 Ga0496124_0058281_1480_2913 466
146 iso_pu_bacteria 2871451962 2871455824 468
147 iso_pu_bacteria 2551306352 2552747996 474
148 iso_pu_bacteria 2639762793 2640736860 474
149 iso_pu_bacteria 2643221665 2644363487 474
150 iso_pu_bacteria 2675903507 2678230215 474
151 iso_pu_bacteria 2744054655 2745160485 474
152 iso_pu_bacteria 2773857761 2774390741 474
153 iso_pu_bacteria 2773857770 2774438225 474
154 iso_pu_bacteria 2916699645 2916699958 474
155 iso_pu_bacteria 2919182534 2919184859 474
156 iso_pu_bacteria 2928515477 2928518040 474
157 iso_pu_bacteria 2984568884 2984572034 474
158 iso_pu_bacteria 8033232454 8033234918 474
159 3300003856 Ga0058692_1000008 Ga0058692_100000857 478
160 3300005272 Ga0065703_1000081 Ga0065703_10000814 478
161 3300005353 Ga0070669_100006589 Ga0070669_1000065896 478
162 3300005364 Ga0070673_100061611 Ga0070673_1000616112 478
163 3300005548 Ga0070665_100009067 Ga0070665_1000090675 478
164 3300006177 Ga0075362_10036361 Ga0075362_100363612 478
165 3300009093 Ga0105240_10007384 Ga0105240_100073847 478
166 3300009148 Ga0105243_10000041 Ga0105243_1000004196 478
167 3300009553 Ga0105249_10000340 Ga0105249_1000034032 478
168 3300025728 Ga0207655_1011243 Ga0207655_10112434 478
169 3300025728 Ga0207655_1012581 Ga0207655_10125814 478
170 3300025900 Ga0207710_10000021 Ga0207710_1000002133 478
171 3300025923 Ga0207681_10001105 Ga0207681_100011058 478
172 3300025935 Ga0207709_10000023 Ga0207709_10000023297 478
173 3300025961 Ga0207712_10006298 Ga0207712_100062987 478
174 3300027312 Ga0209371_1000038 Ga0209371_100003856 478
175 3300028379 Ga0268266_10027061 Ga0268266_100270612 478
176 3300030500 Ga0268256_1000038 Ga0268256_100003856 478

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02233

PNTB

NAD(P) transhydrogenase beta subunit

42

492

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1nm5-assembly1.cif.gz_C r. rubrum transhydrogenase (di.q132n)2(diii)1 asymmetric complex 0.9944 301 474
2fsv-assembly1.cif.gz_C structure of transhydrogenase (di.d135n.nad+)2(diii.e155w.nadp+)1 asymmetric complex 0.9919 301 474
1nm5-assembly1.cif.gz_C r. rubrum transhydrogenase (di.q132n)2(diii)1 asymmetric complex 0.9887 301 474
2fsv-assembly1.cif.gz_C structure of transhydrogenase (di.d135n.nad+)2(diii.e155w.nadp+)1 asymmetric complex 0.9862 301 474
1d4o-assembly1.cif.gz_A crystal structure of transhydrogenase domain iii at 1.2 angstroms resolution 0.9824 302 474
ID Description Score Start End Superfamily
2bruC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.9325 308 472 3.40.50.1220
2bruC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.9167 308 472 3.40.50.1220
1e3tA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.8882 300 474 3.40.50.1220
1e3tA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.8835 300 474 3.40.50.1220
af_Q54DA9_190_372_3.40.50.1220 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.7086 307 477 3.40.50.1220
ID Description Score Start End GO Terms
AF-A0A6G3V3N8-F1-model_v4 deleted 1.002 381 474
AF-A0A3C1RMY0-F1-model_v4 proton-translocating NAD(P)(+) transhydrogenase (EC 7.1.1.1) 1.002 390 474 GO:0008750
GO:0016020
AF-A0A3D3BQ94-F1-model_v4 proton-translocating NAD(P)(+) transhydrogenase (EC 7.1.1.1) 1.001 331 474 GO:0008750
GO:0016020
AF-A0A5E4Z2R4-F1-model_v4 proton-translocating NAD(P)(+) transhydrogenase (EC 7.1.1.1) 1.001 366 473 GO:0008750
GO:0016020
AF-A0A3M4G704-F1-model_v4 deleted 1 303 474

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Predicted Structure (AlphaFold2)

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