F260226
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 172 | 135 | 159 | 94 |
Family's Representative Sequence
| Representative Sequence | 3300005435|Ga0070714_100203224|Ga0070714_1002032243 |
| Length | 104 |
| Sequence | MRKPMRLEWSAYALADRTAIFDYIEADSPRAAIAVDDRIREQVATLAQFPHSGRPGRIEGTRELVISRTPYIVACRITGDTVRILRVLHGSRRWPDEVSEESQE |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2513237102 | Bradyrhizobium japonicum USDA 135 | Isolate | Nodule |
| 2 | 2513237137 | Bradyrhizobium elkanii USDA 94 | Isolate | Nodule |
| 3 | 2517572143 | Bradyrhizobium elkanii USDA 76 | Isolate | Nodule |
| 4 | 2558860100 | Sinorhizobium sp. PC2 | Isolate | Nodule |
| 5 | 2643221564 | Mesorhizobium sp. Root157 | Isolate | Unclassified |
| 6 | 2643221723 | Ensifer sp. Root278 | Isolate | Unclassified |
| 7 | 2767802442 | Phyllobacterium brassicacearum 29-15 | Isolate | Rhizoplane |
| 8 | 2830075706 | Sphingomonas jinjuensis DSM 21457 | Isolate | Rhizosphere |
| 9 | 2879099564 | Bradyrhizobium japonicum UBMA197 | Isolate | Nodule |
| 10 | 2941499720 | Ensifer sp. 4252 | Isolate | Rhizosphere |
| 11 | 3004167301 | Mesorhizobium loti 582 | Isolate | Unclassified |
| 12 | 3004334049 | Mesorhizobium huakuii 583 | Isolate | Unclassified |
| 13 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 14 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 15 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 16 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 17 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 20 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 21 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 23 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 25 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 26 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 27 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 28 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 30 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 31 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 33 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 34 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 35 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 36 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 37 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 38 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 39 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 40 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 41 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 42 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 43 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 44 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 46 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 47 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 48 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 49 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 51 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 52 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 54 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 55 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 56 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 57 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 58 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 59 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 60 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 61 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 62 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 63 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 64 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 65 | 3300022730 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU2 | Metagenome | Rhizosphere |
| 66 | 3300024225 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 | Metagenome | Rhizosphere |
| 67 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 68 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 69 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 90 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 91 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 92 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 93 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 94 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 95 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 96 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 97 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 98 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 99 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 100 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 101 | 3300032168 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 102 | 3300033524 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 103 | 3300033541 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 104 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 105 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 106 | 3300038725 | Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 | Metagenome | Unclassified |
| 107 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 108 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 109 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 110 | 3300041460 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG | Metagenome | Rhizoplane |
| 111 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 112 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 113 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 114 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 115 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 116 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300047323 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 121 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 122 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 123 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 125 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 126 | 3300050494 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation | Metagenome | Endosphere |
| 127 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 128 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 129 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300053083 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300053104 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere | Metagenome | Endosphere |
| 132 | 3300053108 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere | Metagenome | Endosphere |
| 133 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 134 | 3300053727 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere | Metagenome | Endosphere |
| 135 | 8019648815 | Bradyrhizobium sp. GM24.11 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.53 |
| Metatranscriptomes | 2.91 |
| Isolates | 7.56 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 6.98 |
| Nodule | 3.49 |
| Rhizoplane | 2.91 |
| Rhizosphere | 80.23 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 6.4 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24737J22298_10022727 | 3300001990 | Bacteria | 1993 |
| 2 | Ga0070683_100085219 | 3300005329 | Bacteria | 2961 |
| 3 | Ga0070683_100163373 | 3300005329 | Bacteria | 2112 |
| 4 | Ga0070680_100069884 | 3300005336 | Unclassified | 2884 |
| 5 | Ga0070680_100516695 | 3300005336 | Bacteria | 1022 |
| 6 | Ga0068868_100085243 | 3300005338 | Bacteria | 2538 |
| 7 | Ga0070661_100683449 | 3300005344 | Bacteria | 835 |
| 8 | Ga0070714_100203224 | 3300005435 | Bacteria | 1813 |
| 9 | Ga0070713_100926646 | 3300005436 | Unclassified | 839 |
| 10 | Ga0070710_10544762 | 3300005437 | Bacteria | 800 |
| 11 | Ga0070711_100049817 | 3300005439 | Bacteria | 2869 |
| 12 | Ga0070711_101026267 | 3300005439 | Bacteria | 708 |
| 13 | Ga0070694_100176521 | 3300005444 | Bacteria | 1577 |
| 14 | Ga0070708_100300328 | 3300005445 | Bacteria | 1512 |
| 15 | Ga0070681_10021114 | 3300005458 | Bacteria | 6524 |
| 16 | Ga0070706_101499034 | 3300005467 | Bacteria | 616 |
| 17 | Ga0070707_100097782 | 3300005468 | Bacteria | 2843 |
| 18 | Ga0070707_100515028 | 3300005468 | Bacteria | 1158 |
| 19 | Ga0070707_100800378 | 3300005468 | Unclassified | 906 |
| 20 | Ga0070698_100991044 | 3300005471 | Bacteria | 787 |
| 21 | Ga0070699_100579741 | 3300005518 | Unclassified | 1022 |
| 22 | Ga0070684_100016161 | 3300005535 | Bacteria | 6097 |
| 23 | Ga0070684_100513076 | 3300005535 | Bacteria | 1111 |
| 24 | Ga0068853_100016021 | 3300005539 | Bacteria | 6164 |
| 25 | Ga0068853_101238976 | 3300005539 | Unclassified | 721 |
| 26 | Ga0070693_100055436 | 3300005547 | Bacteria | 2283 |
| 27 | Ga0068855_100075620 | 3300005563 | Bacteria | 3910 |
| 28 | Ga0068855_102427074 | 3300005563 | Unclassified | 523 |
| 29 | Ga0068855_102437699 | 3300005563 | Bacteria | 521 |
| 30 | Ga0068857_100004487 | 3300005577 | Bacteria | 11799 |
| 31 | Ga0068857_100539237 | 3300005577 | Bacteria | 1098 |
| 32 | Ga0068854_101124460 | 3300005578 | Unclassified | 701 |
| 33 | Ga0068856_101193347 | 3300005614 | Bacteria | 777 |
| 34 | Ga0068852_100104666 | 3300005616 | Bacteria | 2562 |
| 35 | Ga0068861_100841340 | 3300005719 | Plasmid | 864 |
| 36 | Ga0068851_10024144 | 3300005834 | Bacteria | 2976 |
| 37 | Ga0070717_10855529 | 3300006028 | Bacteria | 827 |
| 38 | Ga0070717_11132034 | 3300006028 | Unclassified | 713 |
| 39 | Ga0070716_101335780 | 3300006173 | Bacteria | 581 |
| 40 | Ga0070716_101758379 | 3300006173 | Unclassified | 512 |
| 41 | Ga0070712_100073574 | 3300006175 | Bacteria | 2452 |
| 42 | Ga0070712_101153497 | 3300006175 | Unclassified | 673 |
| 43 | Ga0075367_10367090 | 3300006178 | Plasmid | 909 |
| 44 | Ga0075366_10017709 | 3300006195 | Bacteria | 4105 |
| 45 | Ga0097621_101433322 | 3300006237 | Unclassified | 654 |
| 46 | Ga0075370_10034840 | 3300006353 | Plasmid | 2823 |
| 47 | Ga0075431_102028071 | 3300006847 | Bacteria | 530 |
| 48 | Ga0075436_101329129 | 3300006914 | Bacteria | 544 |
| 49 | Ga0105240_10097138 | 3300009093 | Unclassified | 3590 |
| 50 | Ga0105240_12067652 | 3300009093 | Bacteria | 591 |
| 51 | Ga0111539_10483030 | 3300009094 | Bacteria | 1443 |
| 52 | Ga0105245_10003885 | 3300009098 | Bacteria | 13293 |
| 53 | Ga0105245_10556834 | 3300009098 | Bacteria | 1169 |
| 54 | Ga0105247_11859449 | 3300009101 | Unclassified | 503 |
| 55 | Ga0114129_13371959 | 3300009147 | Bacteria | 515 |
| 56 | Ga0105241_10000051 | 3300009174 | Bacteria | 95075 |
| 57 | Ga0105241_10503457 | 3300009174 | Bacteria | 1080 |
| 58 | Ga0105237_12121886 | 3300009545 | Unclassified | 571 |
| 59 | Ga0105238_10043433 | 3300009551 | Bacteria | 4548 |
| 60 | Ga0105238_10208539 | 3300009551 | Bacteria | 1930 |
| 61 | Ga0105239_10231892 | 3300010375 | Bacteria | 2071 |
| 62 | Ga0157370_10031291 | 3300013104 | Bacteria | 5207 |
| 63 | Ga0157369_10052872 | 3300013105 | Bacteria | 4392 |
| 64 | Ga0157369_10814515 | 3300013105 | Bacteria | 959 |
| 65 | Ga0157374_10321823 | 3300013296 | Bacteria | 1532 |
| 66 | Ga0157374_11733124 | 3300013296 | Unclassified | 650 |
| 67 | Ga0157372_10206141 | 3300013307 | Bacteria | 2278 |
| 68 | Ga0157372_11405940 | 3300013307 | Bacteria | 804 |
| 69 | Ga0163163_12099243 | 3300014325 | Plasmid | 625 |
| 70 | Ga0213872_10000030 | 3300021361 | Bacteria | 144434 |
| 71 | Ga0213872_10021005 | 3300021361 | Bacteria | 3006 |
| 72 | Ga0213875_10000231 | 3300021388 | Bacteria | 56495 |
| 73 | Ga0213875_10001759 | 3300021388 | Bacteria | 13555 |
| 74 | Ga0224712_10119945 | 3300022467 | Unclassified | 1138 |
| 75 | Ga0224712_10418304 | 3300022467 | Plasmid | 640 |
| 76 | Ga0224570_106635 | 3300022730 | Bacteria | 708 |
| 77 | Ga0224572_1004955 | 3300024225 | Bacteria | 2353 |
| 78 | Ga0209025_1027376 | 3300025294 | Bacteria | 2828 |
| 79 | Ga0209758_1005655 | 3300025297 | Bacteria | 9468 |
| 80 | Ga0207656_10136835 | 3300025321 | Unclassified | 1152 |
| 81 | Ga0207692_10511611 | 3300025898 | Bacteria | 763 |
| 82 | Ga0207684_11043836 | 3300025910 | Bacteria | 682 |
| 83 | Ga0207654_10000433 | 3300025911 | Bacteria | 23979 |
| 84 | Ga0207654_10067906 | 3300025911 | Bacteria | 2108 |
| 85 | Ga0207707_11284717 | 3300025912 | Bacteria | 589 |
| 86 | Ga0207695_10396318 | 3300025913 | Bacteria | 1265 |
| 87 | Ga0207695_10424862 | 3300025913 | Unclassified | 1213 |
| 88 | Ga0207693_10034788 | 3300025915 | Bacteria | 3973 |
| 89 | Ga0207646_10571201 | 3300025922 | Bacteria | 1016 |
| 90 | Ga0207694_10024838 | 3300025924 | Bacteria | 4551 |
| 91 | Ga0207687_10012461 | 3300025927 | Bacteria | 5554 |
| 92 | Ga0207687_11439544 | 3300025927 | Unclassified | 592 |
| 93 | Ga0207664_10202570 | 3300025929 | Unclassified | 1714 |
| 94 | Ga0207664_11958296 | 3300025929 | Unclassified | 509 |
| 95 | Ga0207665_10135266 | 3300025939 | Bacteria | 1753 |
| 96 | Ga0207665_10826855 | 3300025939 | Unclassified | 733 |
| 97 | Ga0207661_10020919 | 3300025944 | Bacteria | 4898 |
| 98 | Ga0207667_10610199 | 3300025949 | Unclassified | 1099 |
| 99 | Ga0207667_11747101 | 3300025949 | Bacteria | 587 |
| 100 | Ga0207640_10674958 | 3300025981 | Bacteria | 883 |
| 101 | Ga0207639_10313631 | 3300026041 | Bacteria | 1390 |
| 102 | Ga0207639_10515628 | 3300026041 | Bacteria | 1094 |
| 103 | Ga0207702_11973243 | 3300026078 | Bacteria | 574 |
| 104 | Ga0207674_10010072 | 3300026116 | Bacteria | 10748 |
| 105 | Ga0207674_10173139 | 3300026116 | Bacteria | 2112 |
| 106 | Ga0207675_100924633 | 3300026118 | Plasmid | 889 |
| 107 | Ga0207698_10027560 | 3300026142 | Bacteria | 4035 |
| 108 | Ga0265318_10061021 | 3300028577 | Bacteria | 1405 |
| 109 | Ga0265330_10028293 | 3300031235 | Bacteria | 2527 |
| 110 | Ga0265330_10423031 | 3300031235 | Bacteria | 564 |
| 111 | Ga0265329_10128973 | 3300031242 | Bacteria | 814 |
| 112 | Ga0265340_10323551 | 3300031247 | Bacteria | 682 |
| 113 | Ga0265340_10542796 | 3300031247 | Unclassified | 512 |
| 114 | Ga0265339_10130900 | 3300031249 | Bacteria | 1283 |
| 115 | Ga0265331_10053834 | 3300031250 | Bacteria | 1918 |
| 116 | Ga0265327_10000481 | 3300031251 | Bacteria | 70259 |
| 117 | Ga0265327_10338932 | 3300031251 | Bacteria | 658 |
| 118 | Ga0265313_10046950 | 3300031595 | Bacteria | 2093 |
| 119 | Ga0265314_10245235 | 3300031711 | Bacteria | 1031 |
| 120 | Ga0265342_10045192 | 3300031712 | Bacteria | 2652 |
| 121 | Ga0265342_10314502 | 3300031712 | Bacteria | 822 |
| 122 | Ga0316576_10000012 | 3300031727 | Bacteria | 50505 |
| 123 | Ga0316578_10005828 | 3300031728 | Bacteria | 6023 |
| 124 | Ga0316593_10106854 | 3300032168 | Bacteria | 997 |
| 125 | Ga0316592_1061635 | 3300033524 | Bacteria | 842 |
| 126 | Ga0316596_1146651 | 3300033541 | Bacteria | 647 |
| 127 | Ga0373927_0212070 | 3300035695 | Bacteria | 1272 |
| 128 | Ga0436364_0207585 | 3300037853 | Bacteria | 136246 |
| 129 | Ga0436364_0717007 | 3300037853 | Bacteria | 89692 |
| 130 | Ga0400484_27968 | 3300038725 | Bacteria | 1696 |
| 131 | Ga0400483_055315 | 3300039062 | Bacteria | 4336 |
| 132 | Ga0436361_0137633 | 3300039447 | Bacteria | 60583 |
| 133 | Ga0436361_0872724 | 3300039447 | Bacteria | 57229 |
| 134 | Ga0436363_0634054 | 3300039450 | Unclassified | 641 |
| 135 | Ga0451802_1345468 | 3300041460 | Bacteria | 669 |
| 136 | Ga0466972_0004872 | 3300044658 | Bacteria | 6731 |
| 137 | Ga0466964_0259817 | 3300044706 | Bacteria | 860 |
| 138 | Ga0466968_0276028 | 3300044735 | Bacteria | 803 |
| 139 | Ga0466960_0049519 | 3300044901 | Bacteria | 2023 |
| 140 | Ga0451576_0006250 | 3300045051 | Bacteria | 14662 |
| 141 | Ga0495664_0469973 | 3300046477 | Bacteria | 752 |
| 142 | Ga0495628_0104332 | 3300046516 | Bacteria | 2185 |
| 143 | Ga0495672_0075919 | 3300047320 | Bacteria | 1889 |
| 144 | Ga0495683_0115042 | 3300047323 | Bacteria | 1281 |
| 145 | Ga0496100_0522074 | 3300048903 | Bacteria | 917 |
| 146 | Ga0496110_1688489 | 3300048913 | Unclassified | 543 |
| 147 | Ga0496115_0017660 | 3300048918 | Bacteria | 5461 |
| 148 | Ga0501038_0078400 | 3300049574 | Bacteria | 2787 |
| 149 | Ga0501047_0001511 | 3300049581 | Bacteria | 22699 |
| 150 | nmdc:mga0k408_38575_c1 | 3300050493 | Plasmid | 2742 |
| 151 | nmdc:mga06z11_314303_c1 | 3300050494 | Plasmid | 933 |
| 152 | nmdc:mga07m45_127167_c1 | 3300050496 | Plasmid | 1474 |
| 153 | nmdc:mga08y16_1497980_c1 | 3300050511 | Bacteria | 635 |
| 154 | Ga0495601_0902552 | 3300053077 | Unclassified | 558 |
| 155 | Ga0495655_0303902 | 3300053083 | Bacteria | 549 |
| 156 | Ga0500556_0101212 | 3300053104 | Bacteria | 1110 |
| 157 | Ga0500562_030287 | 3300053108 | Bacteria | 1425 |
| 158 | Ga0500616_0017207 | 3300053153 | Bacteria | 4104 |
| 159 | Ga0500611_023761 | 3300053727 | Bacteria | 1197 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300039062 | Ga0400483_055315 | Ga0400483_055315_3948_4208 | 86 |
| 2 | 3300005439 | Ga0070711_101026267 | Ga0070711_1010262671 | 88 |
| 3 | iso_pu_bacteria | 2830075706 | 2830077439 | 88 |
| 4 | 3300048903 | Ga0496100_0522074 | Ga0496100_0522074_20_295 | 89 |
| 5 | iso_pu_bacteria | 2558860100 | 2558864984 | 89 |
| 6 | 3300039450 | Ga0436363_0634054 | Ga0436363_0634054_270_545 | 90 |
| 7 | 3300046516 | Ga0495628_0104332 | Ga0495628_0104332_1025_1297 | 90 |
| 8 | 3300028577 | Ga0265318_10061021 | Ga0265318_100610212 | 91 |
| 9 | 3300038725 | Ga0400484_27968 | Ga0400484_27968_1255_1530 | 91 |
| 10 | 3300048913 | Ga0496110_1688489 | Ga0496110_1688489_116_391 | 91 |
| 11 | 3300053077 | Ga0495601_0902552 | Ga0495601_0902552_202_477 | 91 |
| 12 | 3300005329 | Ga0070683_100085219 | Ga0070683_1000852192 | 92 |
| 13 | 3300005329 | Ga0070683_100163373 | Ga0070683_1001633733 | 92 |
| 14 | 3300005336 | Ga0070680_100069884 | Ga0070680_1000698845 | 92 |
| 15 | 3300005338 | Ga0068868_100085243 | Ga0068868_1000852435 | 92 |
| 16 | 3300005344 | Ga0070661_100683449 | Ga0070661_1006834491 | 92 |
| 17 | 3300005436 | Ga0070713_100926646 | Ga0070713_1009266462 | 92 |
| 18 | 3300005437 | Ga0070710_10544762 | Ga0070710_105447623 | 92 |
| 19 | 3300005439 | Ga0070711_100049817 | Ga0070711_1000498174 | 92 |
| 20 | 3300005458 | Ga0070681_10021114 | Ga0070681_100211146 | 92 |
| 21 | 3300005535 | Ga0070684_100016161 | Ga0070684_1000161614 | 92 |
| 22 | 3300005535 | Ga0070684_100513076 | Ga0070684_1005130762 | 92 |
| 23 | 3300005539 | Ga0068853_100016021 | Ga0068853_1000160216 | 92 |
| 24 | 3300005539 | Ga0068853_101238976 | Ga0068853_1012389762 | 92 |
| 25 | 3300005547 | Ga0070693_100055436 | Ga0070693_1000554363 | 92 |
| 26 | 3300005563 | Ga0068855_100075620 | Ga0068855_1000756203 | 92 |
| 27 | 3300005563 | Ga0068855_102437699 | Ga0068855_1024376992 | 92 |
| 28 | 3300005577 | Ga0068857_100539237 | Ga0068857_1005392372 | 92 |
| 29 | 3300005578 | Ga0068854_101124460 | Ga0068854_1011244602 | 92 |
| 30 | 3300005614 | Ga0068856_101193347 | Ga0068856_1011933472 | 92 |
| 31 | 3300005616 | Ga0068852_100104666 | Ga0068852_1001046663 | 92 |
| 32 | 3300005834 | Ga0068851_10024144 | Ga0068851_100241445 | 92 |
| 33 | 3300006028 | Ga0070717_10855529 | Ga0070717_108555292 | 92 |
| 34 | 3300006028 | Ga0070717_11132034 | Ga0070717_111320342 | 92 |
| 35 | 3300006173 | Ga0070716_101758379 | Ga0070716_1017583792 | 92 |
| 36 | 3300006175 | Ga0070712_100073574 | Ga0070712_1000735745 | 92 |
| 37 | 3300006175 | Ga0070712_101153497 | Ga0070712_1011534972 | 92 |
| 38 | 3300006914 | Ga0075436_101329129 | Ga0075436_1013291292 | 92 |
| 39 | 3300009093 | Ga0105240_10097138 | Ga0105240_100971385 | 92 |
| 40 | 3300009098 | Ga0105245_10003885 | Ga0105245_1000388514 | 92 |
| 41 | 3300009098 | Ga0105245_10556834 | Ga0105245_105568342 | 92 |
| 42 | 3300009174 | Ga0105241_10503457 | Ga0105241_105034572 | 92 |
| 43 | 3300009551 | Ga0105238_10043433 | Ga0105238_100434336 | 92 |
| 44 | 3300009551 | Ga0105238_10208539 | Ga0105238_102085392 | 92 |
| 45 | 3300010375 | Ga0105239_10231892 | Ga0105239_102318922 | 92 |
| 46 | 3300013105 | Ga0157369_10052872 | Ga0157369_100528722 | 92 |
| 47 | 3300013105 | Ga0157369_10814515 | Ga0157369_108145152 | 92 |
| 48 | 3300013296 | Ga0157374_10321823 | Ga0157374_103218232 | 92 |
| 49 | 3300013307 | Ga0157372_10206141 | Ga0157372_102061412 | 92 |
| 50 | 3300021361 | Ga0213872_10000030 | Ga0213872_10000030106 | 92 |
| 51 | 3300022467 | Ga0224712_10119945 | Ga0224712_101199452 | 92 |
| 52 | 3300025321 | Ga0207656_10136835 | Ga0207656_101368352 | 92 |
| 53 | 3300025898 | Ga0207692_10511611 | Ga0207692_105116112 | 92 |
| 54 | 3300025911 | Ga0207654_10067906 | Ga0207654_100679062 | 92 |
| 55 | 3300025913 | Ga0207695_10424862 | Ga0207695_104248622 | 92 |
| 56 | 3300025915 | Ga0207693_10034788 | Ga0207693_100347885 | 92 |
| 57 | 3300025924 | Ga0207694_10024838 | Ga0207694_100248386 | 92 |
| 58 | 3300025927 | Ga0207687_10012461 | Ga0207687_100124612 | 92 |
| 59 | 3300025927 | Ga0207687_11439544 | Ga0207687_114395441 | 92 |
| 60 | 3300025929 | Ga0207664_11958296 | Ga0207664_119582961 | 92 |
| 61 | 3300025939 | Ga0207665_10135266 | Ga0207665_101352663 | 92 |
| 62 | 3300025939 | Ga0207665_10826855 | Ga0207665_108268552 | 92 |
| 63 | 3300025944 | Ga0207661_10020919 | Ga0207661_100209193 | 92 |
| 64 | 3300025949 | Ga0207667_10610199 | Ga0207667_106101992 | 92 |
| 65 | 3300025949 | Ga0207667_11747101 | Ga0207667_117471012 | 92 |
| 66 | 3300025981 | Ga0207640_10674958 | Ga0207640_106749582 | 92 |
| 67 | 3300026041 | Ga0207639_10515628 | Ga0207639_105156282 | 92 |
| 68 | 3300026078 | Ga0207702_11973243 | Ga0207702_119732432 | 92 |
| 69 | 3300026116 | Ga0207674_10173139 | Ga0207674_101731392 | 92 |
| 70 | 3300026142 | Ga0207698_10027560 | Ga0207698_100275602 | 92 |
| 71 | 3300039447 | Ga0436361_0137633 | Ga0436361_0137633_510_794 | 92 |
| 72 | iso_pu_bacteria | 2643221564 | 2643837211 | 92 |
| 73 | 3300006237 | Ga0097621_101433322 | Ga0097621_1014333222 | 93 |
| 74 | 3300031727 | Ga0316576_10000012 | Ga0316576_1000001238 | 93 |
| 75 | 3300031728 | Ga0316578_10005828 | Ga0316578_100058284 | 93 |
| 76 | 3300032168 | Ga0316593_10106854 | Ga0316593_101068543 | 93 |
| 77 | 3300033524 | Ga0316592_1061635 | Ga0316592_10616353 | 93 |
| 78 | 3300033541 | Ga0316596_1146651 | Ga0316596_11466512 | 93 |
| 79 | iso_pu_bacteria | 2643221723 | 2644672331 | 93 |
| 80 | iso_pu_bacteria | 2767802442 | 2770199539 | 93 |
| 81 | iso_pu_bacteria | 2941499720 | 2941506947 | 93 |
| 82 | iso_pu_bacteria | 3004167301 | 3004174857 | 93 |
| 83 | iso_pu_bacteria | 3004334049 | 3004342088 | 93 |
| 84 | 3300005468 | Ga0070707_100097782 | Ga0070707_1000977822 | 94 |
| 85 | 3300005468 | Ga0070707_100800378 | Ga0070707_1008003782 | 94 |
| 86 | 3300005518 | Ga0070699_100579741 | Ga0070699_1005797412 | 94 |
| 87 | 3300005577 | Ga0068857_100004487 | Ga0068857_10000448721 | 94 |
| 88 | 3300009094 | Ga0111539_10483030 | Ga0111539_104830303 | 94 |
| 89 | 3300009147 | Ga0114129_13371959 | Ga0114129_133719592 | 94 |
| 90 | 3300009545 | Ga0105237_12121886 | Ga0105237_121218861 | 94 |
| 91 | 3300013307 | Ga0157372_11405940 | Ga0157372_114059401 | 94 |
| 92 | 3300014325 | Ga0163163_12099243 | Ga0163163_120992432 | 94 |
| 93 | 3300021388 | Ga0213875_10000231 | Ga0213875_1000023124 | 94 |
| 94 | 3300021388 | Ga0213875_10001759 | Ga0213875_100017595 | 94 |
| 95 | 3300025294 | Ga0209025_1027376 | Ga0209025_10273764 | 94 |
| 96 | 3300026116 | Ga0207674_10010072 | Ga0207674_1001007216 | 94 |
| 97 | 3300037853 | Ga0436364_0207585 | Ga0436364_0207585_44685_44969 | 94 |
| 98 | 3300037853 | Ga0436364_0717007 | Ga0436364_0717007_48347_48631 | 94 |
| 99 | 3300045051 | Ga0451576_0006250 | Ga0451576_0006250_2655_2939 | 94 |
| 100 | 3300049574 | Ga0501038_0078400 | Ga0501038_0078400_306_590 | 94 |
| 101 | 3300050511 | nmdc:mga08y16_1497980_c1 | nmdc:mga08y16_1497980_c1_213_497 | 94 |
| 102 | 3300053104 | Ga0500556_0101212 | Ga0500556_0101212_25_309 | 94 |
| 103 | iso_pu_bacteria | 2513237102 | 2513706992 | 94 |
| 104 | iso_pu_bacteria | 2513237137 | 2513862203 | 94 |
| 105 | iso_pu_bacteria | 2517572143 | 2517896280 | 94 |
| 106 | iso_pu_bacteria | 2879099564 | 2879099972 | 94 |
| 107 | iso_pu_bacteria | 8019648815 | 8019659333 | 94 |
| 108 | 3300005336 | Ga0070680_100516695 | Ga0070680_1005166952 | 95 |
| 109 | 3300005563 | Ga0068855_102427074 | Ga0068855_1024270741 | 95 |
| 110 | 3300009174 | Ga0105241_10000051 | Ga0105241_1000005110 | 95 |
| 111 | 3300022467 | Ga0224712_10418304 | Ga0224712_104183042 | 95 |
| 112 | 3300025911 | Ga0207654_10000433 | Ga0207654_1000043323 | 95 |
| 113 | 3300025912 | Ga0207707_11284717 | Ga0207707_112847172 | 95 |
| 114 | 3300031242 | Ga0265329_10128973 | Ga0265329_101289731 | 95 |
| 115 | 3300031247 | Ga0265340_10542796 | Ga0265340_105427962 | 95 |
| 116 | 3300031249 | Ga0265339_10130900 | Ga0265339_101309001 | 95 |
| 117 | 3300031250 | Ga0265331_10053834 | Ga0265331_100538342 | 95 |
| 118 | 3300031595 | Ga0265313_10046950 | Ga0265313_100469503 | 95 |
| 119 | 3300031712 | Ga0265342_10045192 | Ga0265342_100451922 | 95 |
| 120 | 3300048918 | Ga0496115_0017660 | Ga0496115_0017660_4786_5082 | 95 |
| 121 | 3300053153 | Ga0500616_0017207 | Ga0500616_0017207_1006_1293 | 95 |
| 122 | 3300005719 | Ga0068861_100841340 | Ga0068861_1008413401 | 96 |
| 123 | 3300006178 | Ga0075367_10367090 | Ga0075367_103670902 | 96 |
| 124 | 3300006195 | Ga0075366_10017709 | Ga0075366_100177093 | 96 |
| 125 | 3300006353 | Ga0075370_10034840 | Ga0075370_100348404 | 96 |
| 126 | 3300009093 | Ga0105240_12067652 | Ga0105240_120676521 | 96 |
| 127 | 3300013104 | Ga0157370_10031291 | Ga0157370_100312916 | 96 |
| 128 | 3300013296 | Ga0157374_11733124 | Ga0157374_117331242 | 96 |
| 129 | 3300021361 | Ga0213872_10021005 | Ga0213872_100210053 | 96 |
| 130 | 3300025913 | Ga0207695_10396318 | Ga0207695_103963183 | 96 |
| 131 | 3300026041 | Ga0207639_10313631 | Ga0207639_103136311 | 96 |
| 132 | 3300026118 | Ga0207675_100924633 | Ga0207675_1009246331 | 96 |
| 133 | 3300031251 | Ga0265327_10000481 | Ga0265327_1000048140 | 96 |
| 134 | 3300031712 | Ga0265342_10314502 | Ga0265342_103145022 | 96 |
| 135 | 3300039447 | Ga0436361_0872724 | Ga0436361_0872724_55879_56175 | 96 |
| 136 | 3300046477 | Ga0495664_0469973 | Ga0495664_0469973_376_672 | 96 |
| 137 | 3300047320 | Ga0495672_0075919 | Ga0495672_0075919_835_1125 | 96 |
| 138 | 3300047323 | Ga0495683_0115042 | Ga0495683_0115042_567_857 | 96 |
| 139 | 3300050493 | nmdc:mga0k408_38575_c1 | nmdc:mga0k408_38575_c1_1567_1860 | 96 |
| 140 | 3300050494 | nmdc:mga06z11_314303_c1 | nmdc:mga06z11_314303_c1_101_394 | 96 |
| 141 | 3300050496 | nmdc:mga07m45_127167_c1 | nmdc:mga07m45_127167_c1_1065_1358 | 96 |
| 142 | 3300053108 | Ga0500562_030287 | Ga0500562_030287_33_323 | 96 |
| 143 | 3300053727 | Ga0500611_023761 | Ga0500611_023761_586_876 | 96 |
| 144 | 3300005444 | Ga0070694_100176521 | Ga0070694_1001765213 | 97 |
| 145 | 3300031251 | Ga0265327_10338932 | Ga0265327_103389321 | 97 |
| 146 | 3300035695 | Ga0373927_0212070 | Ga0373927_0212070_784_1077 | 97 |
| 147 | 3300041460 | Ga0451802_1345468 | Ga0451802_1345468_314_607 | 97 |
| 148 | 3300044706 | Ga0466964_0259817 | Ga0466964_0259817_381_674 | 97 |
| 149 | 3300049581 | Ga0501047_0001511 | Ga0501047_0001511_20209_20502 | 97 |
| 150 | 3300053083 | Ga0495655_0303902 | Ga0495655_0303902_31_324 | 97 |
| 151 | 3300006173 | Ga0070716_101335780 | Ga0070716_1013357801 | 98 |
| 152 | 3300025297 | Ga0209758_1005655 | Ga0209758_10056553 | 98 |
| 153 | 3300031235 | Ga0265330_10028293 | Ga0265330_100282932 | 98 |
| 154 | 3300031247 | Ga0265340_10323551 | Ga0265340_103235511 | 98 |
| 155 | 3300031711 | Ga0265314_10245235 | Ga0265314_102452352 | 98 |
| 156 | 3300044658 | Ga0466972_0004872 | Ga0466972_0004872_3683_3979 | 98 |
| 157 | 3300044735 | Ga0466968_0276028 | Ga0466968_0276028_104_400 | 98 |
| 158 | 3300044901 | Ga0466960_0049519 | Ga0466960_0049519_955_1251 | 98 |
| 159 | 3300001990 | JGI24737J22298_10022727 | JGI24737J22298_100227273 | 99 |
| 160 | 3300005435 | Ga0070714_100203224 | Ga0070714_1002032243 | 99 |
| 161 | 3300005445 | Ga0070708_100300328 | Ga0070708_1003003283 | 99 |
| 162 | 3300005467 | Ga0070706_101499034 | Ga0070706_1014990341 | 99 |
| 163 | 3300005468 | Ga0070707_100515028 | Ga0070707_1005150281 | 99 |
| 164 | 3300005471 | Ga0070698_100991044 | Ga0070698_1009910442 | 99 |
| 165 | 3300006847 | Ga0075431_102028071 | Ga0075431_1020280712 | 99 |
| 166 | 3300009101 | Ga0105247_11859449 | Ga0105247_118594492 | 99 |
| 167 | 3300022730 | Ga0224570_106635 | Ga0224570_1066351 | 99 |
| 168 | 3300024225 | Ga0224572_1004955 | Ga0224572_10049553 | 99 |
| 169 | 3300025910 | Ga0207684_11043836 | Ga0207684_110438361 | 99 |
| 170 | 3300025922 | Ga0207646_10571201 | Ga0207646_105712011 | 99 |
| 171 | 3300025929 | Ga0207664_10202570 | Ga0207664_102025704 | 99 |
| 172 | 3300031235 | Ga0265330_10423031 | Ga0265330_104230311 | 99 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5czf-assembly2.cif.gz_C | crystal structure of the paaa2-pare2 antitoxin-toxin complex | 0.9008 | 1 | 91 |
| 5ceg-assembly1.cif.gz_B | x-ray structure of toxin/anti-toxin complex from mesorhizobium opportunistum | 0.889 | 1 | 92 |
| 6xrw-assembly2.cif.gz_C | chromosomal parde ta system from p. aeruginosa | 0.8881 | 1 | 85 |
| 6x0a-assembly17.cif.gz_Q | x-ray structure of a chimeric parde toxin-antitoxin complex from mesorhizobium opportunistum | 0.8795 | 3 | 89 |
| 8c26-assembly1.cif.gz_A | parde2 toxin-antitoxin complex from mycobacterium tuberculosis (rv2142a-rv2142c) | 0.8759 | 2 | 86 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WHG7_1_98_3.30.2310.20 | Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like | 0.9312 | 2 | 89 | 3.30.2310.20 |
| 5cw7F00 | Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like | 0.8951 | 1 | 93 | 3.30.2310.20 |
| af_P9WHG5_4_92_3.30.2310.20 | Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like | 0.8922 | 2 | 89 | 3.30.2310.20 |
| 5cegD00 | Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like | 0.8805 | 1 | 90 | 3.30.2310.20 |
| af_P9WHG5_4_92_3.30.2310.20 | Alpha Beta;2-Layer Sandwich;YaeB-like fold;RelE-like | 0.8741 | 2 | 89 | 3.30.2310.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A2V8ZJP4-F1-model_v4 | Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | 1.005 | 1 | 85 |
|
| AF-A0A7W8ECF1-F1-model_v4 | Toxin ParE1/3/4 | 0.9993 | 1 | 91 |
|
| AF-A0A1W6Q3S0-F1-model_v4 | Toxin-antitoxin system toxin RelE/ParE family protein | 0.997 | 1 | 87 |
|
| AF-A0A2V9APZ6-F1-model_v4 | Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | 0.9965 | 1 | 79 |
|
| AF-A0A6B3MBY2-F1-model_v4 | Type II toxin-antitoxin system RelE/ParE family toxin | 0.9962 | 1 | 87 |
|
Predicted Structure (AlphaFold2)
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