F241980

General Info

Members Datasets Scaffolds Average Seq Length
163 135 155 155

Family's Representative Sequence

Representative Sequence 3300031911|Ga0307412_10003934|Ga0307412_1000393410
Length 185
Sequence MNTLEIARPPLPPFTRETALLKVRAAEDAWNSRDPERVALAYTVDSEWRNRDDFVTGRPAIVALLAAKWAREEEYRLVKDLWAFTDNRIAVRFQYECRIAGTWYRCYGNEQWEFAENGLMRRREASVNDLAIAEPDRRFLWDAPAPRPQDYPGLTGVDGLSWSTAAESRIDVSWDFAVIPSAPDE

Samples

Sample ID Description Type Environment
1 2507262055 Bradyrhizobium sp. WSM1417 Isolate Nodule
2 2508501009 Bradyrhizobium sp. WSM471 Isolate Nodule
3 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
4 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
5 2932801729 Bradyrhizobium sp. S3.3.6 Isolate Nodule
6 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
7 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
8 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
12 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
13 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
16 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
17 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
21 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
22 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
37 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
60 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
83 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
86 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
87 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
88 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
89 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
90 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
91 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
92 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
93 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
94 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
95 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
96 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
99 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
100 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
103 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
104 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
105 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
106 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
107 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
110 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
111 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
112 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
113 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
114 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
117 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
118 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
119 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
120 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
122 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
123 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
124 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
125 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
126 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
127 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
128 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
129 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
130 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
131 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
132 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
133 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
134 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
135 8019648815 Bradyrhizobium sp. GM24.11 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.09
Metatranscriptomes 0
Isolates 4.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.18
Nodule 3.68
Rhizoplane 4.91
Rhizosphere 65.64
Stem 0
Stem Tuber 0
Unclassified 8.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10139550 3300003316 Bacteria 4270
2 rootH2_10139090 3300003320 Bacteria 1904
3 rootL2_10071684 3300003322 Bacteria 4395
4 Ga0055525_1000063 3300003759 Bacteria 198877
5 Ga0055525_1000064 3300003759 Bacteria 198750
6 Ga0055542_1000123 3300003762 Bacteria 101557
7 Ga0055529_1000144 3300003763 Bacteria 101557
8 Ga0070683_100388427 3300005329 Bacteria 1330
9 Ga0070677_10191701 3300005333 Bacteria 980
10 Ga0068869_101456863 3300005334 Bacteria 607
11 Ga0068868_101297732 3300005338 Bacteria 676
12 Ga0070661_100168780 3300005344 Bacteria 1661
13 Ga0070675_100213903 3300005354 Bacteria 1677
14 Ga0070671_101096877 3300005355 Bacteria 699
15 Ga0070674_100001506 3300005356 Bacteria 12427
16 Ga0070708_100007059 3300005445 Bacteria 8963
17 Ga0070678_100000187 3300005456 Bacteria 27177
18 Ga0068867_100128540 3300005459 Bacteria 1966
19 Ga0068867_101424540 3300005459 Bacteria 643
20 Ga0070707_100272564 3300005468 Bacteria 1645
21 Ga0070679_100090046 3300005530 Bacteria 3056
22 Ga0070665_100474527 3300005548 Bacteria 1261
23 Ga0070704_100731900 3300005549 Bacteria 879
24 Ga0068855_100058904 3300005563 Bacteria 4495
25 Ga0068854_100108066 3300005578 Bacteria 2094
26 Ga0068852_100039336 3300005616 Bacteria 3981
27 Ga0068859_100477869 3300005617 Bacteria 1342
28 Ga0068864_102450118 3300005618 Bacteria 528
29 Ga0068861_100329450 3300005719 Bacteria 1332
30 Ga0068858_100000273 3300005842 Bacteria 55482
31 Ga0075368_10009237 3300006042 Bacteria 3542
32 Ga0075364_10164801 3300006051 Bacteria 1497
33 Ga0068871_100170512 3300006358 Bacteria 1865
34 Ga0068871_101125962 3300006358 Unclassified 734
35 Ga0075428_101711776 3300006844 Bacteria 656
36 Ga0097620_100477849 3300006931 Bacteria 1342
37 Ga0105244_10067167 3300009036 Bacteria 1794
38 Ga0105240_10004052 3300009093 Bacteria 22539
39 Ga0105245_10008847 3300009098 Bacteria 8784
40 Ga0105243_10000077 3300009148 Bacteria 110432
41 Ga0105243_10815808 3300009148 Bacteria 921
42 Ga0105241_10125246 3300009174 Bacteria 2074
43 Ga0105248_10275761 3300009177 Bacteria 1893
44 Ga0105237_10115971 3300009545 Bacteria 2672
45 Ga0105238_10717562 3300009551 Bacteria 1012
46 Ga0105239_10000913 3300010375 Bacteria 41928
47 Ga0157370_10066826 3300013104 Bacteria 3399
48 Ga0157378_12259859 3300013297 Bacteria 595
49 Ga0163162_10028275 3300013306 Bacteria 5547
50 Ga0163162_11551286 3300013306 Bacteria 755
51 Ga0157372_10565353 3300013307 Bacteria 1325
52 Ga0182008_10209563 3300014497 Bacteria 994
53 Ga0157376_10714636 3300014969 Bacteria 1008
54 Ga0163161_10170895 3300017792 Bacteria 1662
55 Ga0209563_100066 3300025230 Bacteria 257382
56 Ga0209148_1000011 3300025254 Bacteria 1196503
57 Ga0209233_1049910 3300025261 Bacteria 857
58 Ga0209455_1000006 3300025272 Bacteria 1196503
59 Ga0209455_1027678 3300025272 Bacteria 1001
60 Ga0207647_10017116 3300025904 Bacteria 4935
61 Ga0207645_10149843 3300025907 Bacteria 1522
62 Ga0207654_10022953 3300025911 Bacteria 3336
63 Ga0207695_10000006 3300025913 Bacteria 1135309
64 Ga0207695_10000017 3300025913 Bacteria 769384
65 Ga0207657_10063438 3300025919 Bacteria 3159
66 Ga0207649_10133227 3300025920 Bacteria 1691
67 Ga0207646_10040280 3300025922 Bacteria 4202
68 Ga0207694_10895251 3300025924 Bacteria 750
69 Ga0207687_10002092 3300025927 Bacteria 13638
70 Ga0207687_10080108 3300025927 Bacteria 2356
71 Ga0207709_10000110 3300025935 Bacteria 127725
72 Ga0207669_10000015 3300025937 Bacteria 125492
73 Ga0207704_10270678 3300025938 Bacteria 1286
74 Ga0207689_10376664 3300025942 Bacteria 1181
75 Ga0207667_10170939 3300025949 Bacteria 2234
76 Ga0207640_10080783 3300025981 Bacteria 2220
77 Ga0207703_10000403 3300026035 Bacteria 46432
78 Ga0207648_10076076 3300026089 Bacteria 2926
79 Ga0207648_10195886 3300026089 Bacteria 1791
80 Ga0207675_100367234 3300026118 Bacteria 1413
81 Ga0207683_10000954 3300026121 Bacteria 26517
82 Ga0207698_10041962 3300026142 Bacteria 3414
83 Ga0268266_10296897 3300028379 Bacteria 1506
84 Ga0265327_10000118 3300031251 Bacteria 172792
85 Ga0265327_10000275 3300031251 Bacteria 101668
86 Ga0265327_10005676 3300031251 Bacteria 10326
87 Ga0307508_10009273 3300031616 Bacteria 9057
88 Ga0307412_10003934 3300031911 Bacteria 8276
89 Ga0307411_10700059 3300032005 Bacteria 882
90 Ga0373931_0948203 3300035691 Bacteria 580
91 Ga0436364_1156681 3300037853 Bacteria 987
92 Ga0436360_0964694 3300039438 Bacteria 671
93 Ga0451795_1545161 3300041456 Bacteria 1403
94 Ga0451839_0355255 3300041496 Bacteria 647
95 Ga0439455_0139948 3300042012 Bacteria 685
96 Ga0466964_0213489 3300044706 Bacteria 933
97 Ga0495638_0000494 3300046460 Bacteria 46930
98 Ga0495641_0454883 3300046461 Bacteria 583
99 Ga0495583_0002071 3300046506 Bacteria 18127
100 Ga0495583_0078258 3300046506 Bacteria 1440
101 Ga0495583_0081832 3300046506 Bacteria 1402
102 Ga0495606_0035258 3300046507 Bacteria 3422
103 Ga0495643_0399364 3300046522 Bacteria 607
104 Ga0495648_0000088 3300046524 Bacteria 115109
105 Ga0495648_0017618 3300046524 Bacteria 5097
106 Ga0495648_0065938 3300046524 Bacteria 2125
107 Ga0495642_0018254 3300046528 Bacteria 2745
108 Ga0495642_0026104 3300046528 Bacteria 2319
109 Ga0495668_0008420 3300046616 Bacteria 6446
110 Ga0495625_0002611 3300046660 Bacteria 19281
111 Ga0495625_0018082 3300046660 Bacteria 5510
112 Ga0495625_0428411 3300046660 Bacteria 821
113 Ga0495625_0814422 3300046660 Bacteria 542
114 Ga0495670_0074825 3300046691 Bacteria 1719
115 Ga0495649_0137105 3300046694 Bacteria 1289
116 Ga0495660_0044470 3300046810 Bacteria 2443
117 Ga0495687_000192 3300047443 Bacteria 87877
118 Ga0495677_0030536 3300047445 Bacteria 1961
119 Ga0495673_0024330 3300047469 Bacteria 2929
120 Ga0495673_0354721 3300047469 Bacteria 517
121 Ga0496104_0065577 3300048907 Bacteria 3446
122 Ga0496107_0007390 3300048910 Bacteria 7575
123 Ga0496107_0549108 3300048910 Bacteria 856
124 Ga0496108_0258181 3300048911 Bacteria 1516
125 Ga0496112_1035760 3300048915 Bacteria 740
126 Ga0496115_0630854 3300048918 Bacteria 849
127 Ga0496115_1034159 3300048918 Bacteria 626
128 Ga0496119_0018757 3300048922 Bacteria 5131
129 Ga0496120_0019923 3300048923 Bacteria 4278
130 Ga0496120_0372894 3300048923 Bacteria 636
131 Ga0496121_0160127 3300048924 Bacteria 1647
132 Ga0496124_0000306 3300048927 Bacteria 90641
133 Ga0496125_0045416 3300048928 Bacteria 3697
134 Ga0496126_0016054 3300048929 Bacteria 7509
135 Ga0496126_0017302 3300048929 Bacteria 7184
136 Ga0495682_0012607 3300049460 Bacteria 3238
137 Ga0501047_0321629 3300049581 Bacteria 1387
138 Ga0501226_000009 3300049853 Bacteria 194138
139 Ga0500610_0000059 3300053079 Bacteria 34324
140 Ga0500578_0012804 3300053086 Bacteria 5413
141 Ga0500643_000828 3300053087 Bacteria 19969
142 Ga0500646_0091139 3300053090 Bacteria 944
143 Ga0500595_008944 3300053119 Bacteria 4068
144 Ga0500595_016661 3300053119 Bacteria 2732
145 Ga0500608_089529 3300053122 Bacteria 1440
146 Ga0500617_237755 3300053124 Bacteria 630
147 Ga0500559_0074416 3300053136 Bacteria 1534
148 Ga0500577_0201715 3300053142 Bacteria 858
149 Ga0500588_0007129 3300053146 Bacteria 2565
150 Ga0500616_0000352 3300053153 Bacteria 65784
151 Ga0500616_0003790 3300053153 Bacteria 11229
152 Ga0500616_0008267 3300053153 Bacteria 6485
153 Ga0500616_0023042 3300053153 Bacteria 3472
154 Ga0500620_034781 3300053155 Bacteria 1620
155 Ga0500645_000360 3300053730 Bacteria 32459

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009545 Ga0105237_10115971 Ga0105237_101159711 115
2 3300005549 Ga0070704_100731900 Ga0070704_1007319002 117
3 3300005617 Ga0068859_100477869 Ga0068859_1004778692 117
4 3300006931 Ga0097620_100477849 Ga0097620_1004778492 117
5 3300053086 Ga0500578_0012804 Ga0500578_0012804_3273_3743 118
6 3300053146 Ga0500588_0007129 Ga0500588_0007129_1808_2278 118
7 iso_pu_bacteria 2507262055 2507511519 132
8 iso_pu_bacteria 2508501009 2508545325 132
9 iso_pu_bacteria 2932794094 2932795893 132
10 iso_pu_bacteria 2932801729 2932802131 132
11 iso_pu_bacteria 2935883170 2935886319 132
12 iso_pu_bacteria 8019648815 8019650567 132
13 iso_pu_bacteria 2887478801 2887479937 133
14 3300003759 Ga0055525_1000063 Ga0055525_1000063104 135
15 3300003759 Ga0055525_1000064 Ga0055525_1000064104 135
16 3300003762 Ga0055542_1000123 Ga0055542_100012368 135
17 3300003763 Ga0055529_1000144 Ga0055529_100014468 135
18 3300005329 Ga0070683_100388427 Ga0070683_1003884272 135
19 3300005334 Ga0068869_101456863 Ga0068869_1014568631 135
20 3300005338 Ga0068868_101297732 Ga0068868_1012977322 135
21 3300005344 Ga0070661_100168780 Ga0070661_1001687802 135
22 3300005356 Ga0070674_100001506 Ga0070674_10000150611 135
23 3300005456 Ga0070678_100000187 Ga0070678_10000018727 135
24 3300005459 Ga0068867_100128540 Ga0068867_1001285403 135
25 3300005459 Ga0068867_101424540 Ga0068867_1014245401 135
26 3300005548 Ga0070665_100474527 Ga0070665_1004745272 135
27 3300005563 Ga0068855_100058904 Ga0068855_1000589044 135
28 3300005618 Ga0068864_102450118 Ga0068864_1024501181 135
29 3300005719 Ga0068861_100329450 Ga0068861_1003294504 135
30 3300005842 Ga0068858_100000273 Ga0068858_10000027325 135
31 3300006358 Ga0068871_100170512 Ga0068871_1001705123 135
32 3300006844 Ga0075428_101711776 Ga0075428_1017117762 135
33 3300009098 Ga0105245_10008847 Ga0105245_100088475 135
34 3300009148 Ga0105243_10000077 Ga0105243_1000007771 135
35 3300009551 Ga0105238_10717562 Ga0105238_107175621 135
36 3300013306 Ga0163162_10028275 Ga0163162_100282754 135
37 3300013306 Ga0163162_11551286 Ga0163162_115512862 135
38 3300013307 Ga0157372_10565353 Ga0157372_105653532 135
39 3300014969 Ga0157376_10714636 Ga0157376_107146362 135
40 3300025230 Ga0209563_100066 Ga0209563_100066167 135
41 3300025254 Ga0209148_1000011 Ga0209148_1000011829 135
42 3300025261 Ga0209233_1049910 Ga0209233_10499101 135
43 3300025272 Ga0209455_1000006 Ga0209455_1000006364 135
44 3300025272 Ga0209455_1027678 Ga0209455_10276782 135
45 3300025907 Ga0207645_10149843 Ga0207645_101498433 135
46 3300025919 Ga0207657_10063438 Ga0207657_100634384 135
47 3300025920 Ga0207649_10133227 Ga0207649_101332273 135
48 3300025924 Ga0207694_10895251 Ga0207694_108952512 135
49 3300025927 Ga0207687_10002092 Ga0207687_1000209211 135
50 3300025935 Ga0207709_10000110 Ga0207709_1000011056 135
51 3300025937 Ga0207669_10000015 Ga0207669_1000001512 135
52 3300025938 Ga0207704_10270678 Ga0207704_102706782 135
53 3300025942 Ga0207689_10376664 Ga0207689_103766643 135
54 3300025949 Ga0207667_10170939 Ga0207667_101709391 135
55 3300026035 Ga0207703_10000403 Ga0207703_1000040325 135
56 3300026089 Ga0207648_10076076 Ga0207648_100760763 135
57 3300026089 Ga0207648_10195886 Ga0207648_101958862 135
58 3300026118 Ga0207675_100367234 Ga0207675_1003672342 135
59 3300026121 Ga0207683_10000954 Ga0207683_1000095412 135
60 3300028379 Ga0268266_10296897 Ga0268266_102968972 135
61 3300031616 Ga0307508_10009273 Ga0307508_100092732 135
62 3300031911 Ga0307412_10003934 Ga0307412_1000393410 135
63 3300032005 Ga0307411_10700059 Ga0307411_107000592 135
64 3300035691 Ga0373931_0948203 Ga0373931_0948203_53_484 135
65 3300039438 Ga0436360_0964694 Ga0436360_0964694_86_547 135
66 3300041456 Ga0451795_1545161 Ga0451795_1545161_632_1111 135
67 3300046460 Ga0495638_0000494 Ga0495638_0000494_12946_13419 135
68 3300046506 Ga0495583_0002071 Ga0495583_0002071_16509_16988 135
69 3300046506 Ga0495583_0078258 Ga0495583_0078258_155_634 135
70 3300046507 Ga0495606_0035258 Ga0495606_0035258_1918_2397 135
71 3300046522 Ga0495643_0399364 Ga0495643_0399364_29_502 135
72 3300046524 Ga0495648_0000088 Ga0495648_0000088_28531_29010 135
73 3300046524 Ga0495648_0065938 Ga0495648_0065938_1616_2095 135
74 3300046528 Ga0495642_0018254 Ga0495642_0018254_1851_2330 135
75 3300046528 Ga0495642_0026104 Ga0495642_0026104_1741_2220 135
76 3300046616 Ga0495668_0008420 Ga0495668_0008420_4667_5146 135
77 3300046660 Ga0495625_0002611 Ga0495625_0002611_11726_12205 135
78 3300046660 Ga0495625_0018082 Ga0495625_0018082_251_730 135
79 3300046691 Ga0495670_0074825 Ga0495670_0074825_236_715 135
80 3300047443 Ga0495687_000192 Ga0495687_000192_58917_59396 135
81 3300047445 Ga0495677_0030536 Ga0495677_0030536_651_1130 135
82 3300048918 Ga0496115_1034159 Ga0496115_1034159_113_592 135
83 3300048922 Ga0496119_0018757 Ga0496119_0018757_2749_3228 135
84 3300048923 Ga0496120_0019923 Ga0496120_0019923_601_1080 135
85 3300048923 Ga0496120_0372894 Ga0496120_0372894_95_574 135
86 3300048924 Ga0496121_0160127 Ga0496121_0160127_40_519 135
87 3300048927 Ga0496124_0000306 Ga0496124_0000306_8766_9323 135
88 3300048928 Ga0496125_0045416 Ga0496125_0045416_752_1231 135
89 3300053079 Ga0500610_0000059 Ga0500610_0000059_19022_19501 135
90 3300053087 Ga0500643_000828 Ga0500643_000828_3728_4207 135
91 3300053122 Ga0500608_089529 Ga0500608_089529_120_599 135
92 3300053136 Ga0500559_0074416 Ga0500559_0074416_117_596 135
93 3300053153 Ga0500616_0000352 Ga0500616_0000352_21017_21496 135
94 3300053153 Ga0500616_0003790 Ga0500616_0003790_9223_9702 135
95 3300053153 Ga0500616_0023042 Ga0500616_0023042_2290_2769 135
96 3300053155 Ga0500620_034781 Ga0500620_034781_516_965 135
97 3300005333 Ga0070677_10191701 Ga0070677_101917012 136
98 3300005354 Ga0070675_100213903 Ga0070675_1002139031 136
99 3300005445 Ga0070708_100007059 Ga0070708_10000705910 136
100 3300005468 Ga0070707_100272564 Ga0070707_1002725643 136
101 3300005530 Ga0070679_100090046 Ga0070679_1000900462 136
102 3300005578 Ga0068854_100108066 Ga0068854_1001080663 136
103 3300005616 Ga0068852_100039336 Ga0068852_1000393362 136
104 3300006042 Ga0075368_10009237 Ga0075368_100092372 136
105 3300006051 Ga0075364_10164801 Ga0075364_101648011 136
106 3300006358 Ga0068871_101125962 Ga0068871_1011259622 136
107 3300009036 Ga0105244_10067167 Ga0105244_100671672 136
108 3300009093 Ga0105240_10004052 Ga0105240_1000405214 136
109 3300009148 Ga0105243_10815808 Ga0105243_108158082 136
110 3300009174 Ga0105241_10125246 Ga0105241_101252462 136
111 3300009177 Ga0105248_10275761 Ga0105248_102757611 136
112 3300013104 Ga0157370_10066826 Ga0157370_100668261 136
113 3300013297 Ga0157378_12259859 Ga0157378_122598591 136
114 3300014497 Ga0182008_10209563 Ga0182008_102095631 136
115 3300017792 Ga0163161_10170895 Ga0163161_101708953 136
116 3300025911 Ga0207654_10022953 Ga0207654_100229534 136
117 3300025913 Ga0207695_10000006 Ga0207695_10000006717 136
118 3300025922 Ga0207646_10040280 Ga0207646_100402802 136
119 3300025927 Ga0207687_10080108 Ga0207687_100801082 136
120 3300025981 Ga0207640_10080783 Ga0207640_100807833 136
121 3300026142 Ga0207698_10041962 Ga0207698_100419624 136
122 3300031251 Ga0265327_10000118 Ga0265327_1000011847 136
123 3300031251 Ga0265327_10000275 Ga0265327_1000027582 136
124 3300031251 Ga0265327_10005676 Ga0265327_100056767 136
125 3300037853 Ga0436364_1156681 Ga0436364_1156681_490_957 136
126 3300041496 Ga0451839_0355255 Ga0451839_0355255_125_604 136
127 3300042012 Ga0439455_0139948 Ga0439455_0139948_123_599 136
128 3300044706 Ga0466964_0213489 Ga0466964_0213489_298_765 136
129 3300046461 Ga0495641_0454883 Ga0495641_0454883_64_528 136
130 3300046506 Ga0495583_0081832 Ga0495583_0081832_213_680 136
131 3300046524 Ga0495648_0017618 Ga0495648_0017618_2898_3362 136
132 3300046660 Ga0495625_0428411 Ga0495625_0428411_74_538 136
133 3300046694 Ga0495649_0137105 Ga0495649_0137105_622_1089 136
134 3300046810 Ga0495660_0044470 Ga0495660_0044470_477_1004 136
135 3300047469 Ga0495673_0024330 Ga0495673_0024330_1017_1481 136
136 3300047469 Ga0495673_0354721 Ga0495673_0354721_39_503 136
137 3300048907 Ga0496104_0065577 Ga0496104_0065577_1592_2074 136
138 3300048910 Ga0496107_0007390 Ga0496107_0007390_3010_3483 136
139 3300048910 Ga0496107_0549108 Ga0496107_0549108_116_598 136
140 3300048911 Ga0496108_0258181 Ga0496108_0258181_868_1350 136
141 3300048915 Ga0496112_1035760 Ga0496112_1035760_70_480 136
142 3300048918 Ga0496115_0630854 Ga0496115_0630854_22_435 136
143 3300048929 Ga0496126_0016054 Ga0496126_0016054_4467_4940 136
144 3300048929 Ga0496126_0017302 Ga0496126_0017302_5504_5917 136
145 3300049460 Ga0495682_0012607 Ga0495682_0012607_597_1064 136
146 3300049581 Ga0501047_0321629 Ga0501047_0321629_664_1152 136
147 3300049853 Ga0501226_000009 Ga0501226_000009_171515_171991 136
148 3300053090 Ga0500646_0091139 Ga0500646_0091139_59_523 136
149 3300053119 Ga0500595_008944 Ga0500595_008944_1853_2320 136
150 3300053119 Ga0500595_016661 Ga0500595_016661_158_631 136
151 3300053124 Ga0500617_237755 Ga0500617_237755_30_494 136
152 3300053142 Ga0500577_0201715 Ga0500577_0201715_74_544 136
153 3300053153 Ga0500616_0008267 Ga0500616_0008267_1910_2341 136
154 3300053730 Ga0500645_000360 Ga0500645_000360_12501_12968 136
155 iso_pu_bacteria 2935390628 2935391684 136
156 3300003316 rootH1_10139550 rootH1_101395505 137
157 3300003320 rootH2_10139090 rootH2_101390901 137
158 3300003322 rootL2_10071684 rootL2_100716845 137
159 3300005355 Ga0070671_101096877 Ga0070671_1010968771 137
160 3300010375 Ga0105239_10000913 Ga0105239_1000091320 137
161 3300025904 Ga0207647_10017116 Ga0207647_100171163 137
162 3300025913 Ga0207695_10000017 Ga0207695_10000017474 137
163 3300046660 Ga0495625_0814422 Ga0495625_0814422_31_444 137

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07080

DUF1348

Protein of unknown function (DUF1348)

12

140

0.98

PF12680

SnoaL_2

SnoaL-like domain

23

123

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2imj-assembly2.cif.gz_D x-ray crystal structure of protein pfl_3262 from pseudomonas fluorescens. northeast structural genomics consortium target plr14. 0.9985 6 137
2imj-assembly2.cif.gz_D x-ray crystal structure of protein pfl_3262 from pseudomonas fluorescens. northeast structural genomics consortium target plr14. 0.9479 6 137
1oho-assembly1.cif.gz_A-2 crystal structure of ketosteroid isomerase y16f/d40n mutant complexed with equilenin 0.8845 13 125
1dmm-assembly1.cif.gz_A-2 crystal structures of mutant enzymes y57f of ketosteroid isomerase from pseudomonas putida biotype b 0.8832 13 125
1cqs-assembly1.cif.gz_B crystal structure of d103e mutant with equilenineof ksi in pseudomonas putida 0.8824 13 125
ID Description Score Start End Superfamily
2imjD01 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 1 11 137 3.10.450.50
2imjD01 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.9057 11 137 3.10.450.50
af_A0A1D8PD11_9_180_2.40.160.20 Mainly Beta;Beta Barrel;Porin; 0.9006 83 112 2.40.160.20
af_O06820_1_123_3.10.450.50 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.8871 17 125 3.10.450.50
af_A0A1D8PLG7_12_136_3.10.450.50 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.8636 34 125 3.10.450.50
ID Description Score Start End GO Terms
AF-A0A6D1RZ34-F1-model_v4 Protein of uncharacterized function (DUF1348) 1.006 51 134
AF-A0A3C0EGT8-F1-model_v4 DUF1348 domain-containing protein 1.005 37 136
AF-A0A377USM5-F1-model_v4 50S ribosomal protein L21 1.004 41 134 GO:0005840
AF-A0A829QFM1-F1-model_v4 Response regulator receiver domain-containing protein 1.004 44 136
AF-A0A6G2U3H1-F1-model_v4 DUF1348 family protein 1.004 59 136

Feature Viewer

pLDDT pTM Quality
96.67 0.89 High
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Predicted Structure (AlphaFold2)

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