F199287

General Info

Members Datasets Scaffolds Average Seq Length
147 106 147 672

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10012877|Ga0070658_100128774
Length 697
Sequence MNTGRAAELRKLLNQYSYEYHVLDDPSVSDAVYDGLMRELKQLEADDPGLITPDSPTQRVGNVPLSKFIKVTHSHPMISLNDVFDRAEVEAWVTRMDKLLPGTKHEFFCDIKMDGLACALIYEDGVLTQAITRGDGWVGEDVTLNVRTIPNVPLRLRETKQYGSFLQGRTEIRGEVIMLKKDFEALNKKREAEGLPLFKNPRNLAAGTIRQLDPKLVAERPLRFRAYDLIRDDAREVPTNMLAYEALSELGIARNKQAAVFTSLDDVMQFVDSWDGQRHDLPFNTDGLVVKVNDRAAYDKLGTVGKNPRGAIAYKYAAEQATTVVKDIVIYIGRTGAATPVAVFDPVNVAGTTVQHASLHNADEIARKDVRVGDTVVIFKAGDIIPQVERVITELRPVIPMDGESHSVTHAKKLKDYAATGANGRYAAARQPFNFEKALRQQYPELQFERPEGEAIYRLKGASGTILLKEALEHFASRGALDIDGLGEKNAVALVEAGLVHDLADIYTITEEQLLELDRFAEISAQKLVSAIADKKTPPLERFVYGLGIRHVGTQTAIDLTNHFGSLSSLQHATIDQLEAVEGVGTVVAESIVAWFADEDNEELLRKFDTLGVKPHFERKTGKLTGQNFVVTGTLQSMSRDEAAAKIRSLGGTFQSSVAKDTTYLVAGGKVGASKLKKAKTYGTKIIDETEFLKLLA

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
38 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
39 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
72 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
73 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
74 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
75 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
76 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
83 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
84 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
89 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
92 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
93 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
94 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
95 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
96 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
97 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
98 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
99 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
100 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
101 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
102 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
103 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
104 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
105 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.77
Nodule 0
Rhizoplane 0.68
Rhizosphere 75.51
Stem 0
Stem Tuber 0
Unclassified 2.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10012657 3300001979 Unclassified 3174
2 JGI24739J22299_10001318 3300001989 Bacteria 9300
3 JGI24737J22298_10003932 3300001990 Bacteria 5205
4 JGI24735J21928_10000064 3300002067 Bacteria 43570
5 rootH2_10000244 3300003320 Bacteria 697651
6 rootH1_10057568 3300003323 Bacteria 35750
7 Ga0070658_10000012 3300005327 Bacteria 277871
8 Ga0070658_10005369 3300005327 Bacteria 10401
9 Ga0070658_10012877 3300005327 Bacteria 6714
10 Ga0070683_100013289 3300005329 Bacteria 7177
11 Ga0070671_100065938 3300005355 Unclassified 3017
12 Ga0070674_100025093 3300005356 Bacteria 3876
13 Ga0070673_100000192 3300005364 Bacteria 30116
14 Ga0070659_100017909 3300005366 Bacteria 5337
15 Ga0070667_100000001 3300005367 Bacteria 1108638
16 Ga0070678_100000895 3300005456 Bacteria 15332
17 Ga0070681_10009951 3300005458 Bacteria 9373
18 Ga0070685_10000589 3300005466 Bacteria 20154
19 Ga0070685_10011269 3300005466 Bacteria 4679
20 Ga0068855_100000005 3300005563 Bacteria 337711
21 Ga0068857_100000829 3300005577 Bacteria 23132
22 Ga0068856_100000027 3300005614 Bacteria 133290
23 Ga0068852_100000001 3300005616 Bacteria 716526
24 Ga0068852_100000108 3300005616 Bacteria 55450
25 Ga0068863_100043946 3300005841 Unclassified 4241
26 Ga0081455_10000001 3300005937 Bacteria 603871
27 Ga0075365_10000101 3300006038 Bacteria 25031
28 Ga0075365_10001910 3300006038 Bacteria 9820
29 Ga0075368_10000073 3300006042 Bacteria 23993
30 Ga0075369_10023717 3300006186 Bacteria 2538
31 Ga0075366_10000196 3300006195 Bacteria 26575
32 Ga0075366_10000200 3300006195 Bacteria 26406
33 Ga0075366_10034959 3300006195 Bacteria 2962
34 Ga0097621_100000275 3300006237 Bacteria 34774
35 Ga0068871_100000038 3300006358 Bacteria 69723
36 Ga0068865_100010668 3300006881 Bacteria 5727
37 Ga0105240_10000003 3300009093 Bacteria 1183681
38 Ga0105240_10004657 3300009093 Bacteria 20764
39 Ga0105245_10000044 3300009098 Bacteria 135878
40 Ga0105245_10000050 3300009098 Bacteria 128014
41 Ga0105245_10073517 3300009098 Bacteria 3109
42 Ga0105243_10000001 3300009148 Bacteria 1156578
43 Ga0105241_10000003 3300009174 Bacteria 839043
44 Ga0105241_10009986 3300009174 Bacteria 6972
45 Ga0105242_10000011 3300009176 Bacteria 149791
46 Ga0105242_10001796 3300009176 Bacteria 16917
47 Ga0105237_10000002 3300009545 Bacteria 702357
48 Ga0105237_10097940 3300009545 Bacteria 2924
49 Ga0105238_10064883 3300009551 Bacteria 3652
50 Ga0105032_100001 3300009979 Bacteria 472394
51 Ga0105032_100015 3300009979 Bacteria 54103
52 Ga0105028_100668 3300009993 Unclassified 3625
53 Ga0105246_10001052 3300011119 Bacteria 15925
54 Ga0105246_10007755 3300011119 Bacteria 6590
55 Ga0157373_10007549 3300013100 Bacteria 8084
56 Ga0157373_10018198 3300013100 Bacteria 5117
57 Ga0157373_10025342 3300013100 Bacteria 4291
58 Ga0157371_10000105 3300013102 Bacteria 126728
59 Ga0157370_10000220 3300013104 Bacteria 72815
60 Ga0157370_10004174 3300013104 Bacteria 16717
61 Ga0157369_10000075 3300013105 Bacteria 136520
62 Ga0157369_10000505 3300013105 Bacteria 51370
63 Ga0157374_10000058 3300013296 Bacteria 116810
64 Ga0157374_10000115 3300013296 Bacteria 73739
65 Ga0157374_10003322 3300013296 Bacteria 13513
66 Ga0157378_10025856 3300013297 Bacteria 5172
67 Ga0157372_10000160 3300013307 Bacteria 73603
68 Ga0157376_10000007 3300014969 Bacteria 368004
69 Ga0157376_10000083 3300014969 Bacteria 71608
70 Ga0207647_10000402 3300025904 Bacteria 35462
71 Ga0207705_10000038 3300025909 Bacteria 193812
72 Ga0207705_10018523 3300025909 Unclassified 4978
73 Ga0207654_10000002 3300025911 Bacteria 1460142
74 Ga0207707_10012148 3300025912 Bacteria 7485
75 Ga0207695_10000005 3300025913 Bacteria 1196715
76 Ga0207695_10003887 3300025913 Bacteria 20688
77 Ga0207671_10000008 3300025914 Bacteria 798229
78 Ga0207671_10030290 3300025914 Bacteria 4036
79 Ga0207687_10000033 3300025927 Bacteria 135886
80 Ga0207687_10000375 3300025927 Bacteria 29944
81 Ga0207690_10069324 3300025932 Bacteria 2426
82 Ga0207706_10000090 3300025933 Bacteria 93774
83 Ga0207686_10000001 3300025934 Bacteria 1169580
84 Ga0207686_10001892 3300025934 Bacteria 11591
85 Ga0207709_10000002 3300025935 Bacteria 1171536
86 Ga0207669_10013171 3300025937 Bacteria 4097
87 Ga0207661_10001040 3300025944 Bacteria 18449
88 Ga0207679_10000142 3300025945 Bacteria 59334
89 Ga0207667_10000003 3300025949 Bacteria 822935
90 Ga0207667_10000027 3300025949 Bacteria 337700
91 Ga0207658_10000003 3300025986 Bacteria 1151934
92 Ga0207702_10000015 3300026078 Bacteria 250830
93 Ga0207702_10000034 3300026078 Bacteria 164965
94 Ga0207641_10056131 3300026088 Unclassified 3346
95 Ga0207674_10000439 3300026116 Bacteria 53818
96 Ga0207683_10002815 3300026121 Bacteria 15194
97 Ga0207698_10000001 3300026142 Bacteria 625389
98 Ga0207698_10000048 3300026142 Bacteria 90201
99 Ga0209813_10000242 3300027866 Bacteria 16166
100 Ga0268266_10002852 3300028379 Bacteria 18007
101 Ga0265338_10009927 3300028800 Bacteria 11256
102 Ga0316179_1046099 3300030734 Bacteria 16583
103 Ga0316183_1076438 3300030742 Bacteria 5648
104 Ga0316183_1147623 3300030742 Bacteria 7850
105 Ga0316183_1155615 3300030742 Bacteria 8589
106 Ga0316181_1271452 3300030744 Bacteria 11661
107 Ga0316182_1244816 3300030745 Bacteria 31106
108 Ga0307516_10002903 3300031730 Bacteria 22457
109 Ga0307405_10010325 3300031731 Bacteria 4831
110 Ga0307406_10000001 3300031901 Bacteria 638191
111 Ga0307406_10000901 3300031901 Bacteria 16682
112 Ga0395899_0045861 3300037312 Bacteria 3257
113 Ga0395905_0002458 3300037471 Bacteria 20515
114 Ga0395901_0001243 3300038443 Bacteria 27219
115 Ga0439463_003187 3300042016 Bacteria 4163
116 Ga0439446_0000003 3300042156 Bacteria 158513
117 Ga0450909_002328 3300042185 Bacteria 2693
118 Ga0466965_0000138 3300044683 Bacteria 20973
119 Ga0495638_0000551 3300046460 Bacteria 42775
120 Ga0495658_0003128 3300046683 Bacteria 8263
121 Ga0495600_0018837 3300046809 Bacteria 4404
122 Ga0495672_0000010 3300047320 Bacteria 545038
123 Ga0496115_0000405 3300048918 Bacteria 35545
124 nmdc:mga00v17_267_c1 3300050491 Bacteria 30663
125 nmdc:mga00v17_3189_c1 3300050491 Bacteria 8452
126 nmdc:mga0yw44_378_c1 3300050492 Bacteria 15462
127 nmdc:mga0yw44_4_c1 3300050492 Bacteria 450247
128 nmdc:mga0yw44_73_c1 3300050492 Bacteria 36385
129 nmdc:mga0k408_118_c2 3300050493 Bacteria 27769
130 nmdc:mga0k408_2802_c2 3300050493 Bacteria 8203
131 nmdc:mga07m45_29419_c1 3300050496 Bacteria 3038
132 Ga0500643_000043 3300053087 Bacteria 157905
133 Ga0500643_000148 3300053087 Bacteria 71560
134 Ga0500646_0001843 3300053090 Bacteria 5560
135 Ga0500651_0000050 3300053093 Bacteria 78674
136 Ga0500566_0000001 3300053094 Bacteria 1101031
137 Ga0500650_0000001 3300053098 Bacteria 818797
138 Ga0500569_000018 3300053109 Bacteria 42775
139 Ga0500594_0000001 3300053118 Bacteria 1178472
140 Ga0500594_0000082 3300053118 Bacteria 28953
141 Ga0500614_001840 3300053123 Unclassified 4899
142 Ga0500628_000063 3300053129 Bacteria 28758
143 Ga0500577_0004548 3300053142 Bacteria 3677
144 Ga0500577_0004911 3300053142 Bacteria 3559
145 Ga0500577_0008981 3300053142 Bacteria 2881
146 Ga0500579_000688 3300053143 Bacteria 19490
147 Ga0500616_0033123 3300053153 Unclassified 2821

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053142 Ga0500577_0004548 Ga0500577_0004548_19_1698 559
2 3300053153 Ga0500616_0033123 Ga0500616_0033123_507_2525 650
3 3300003320 rootH2_10000244 rootH2_10000244560 651
4 3300006038 Ga0075365_10001910 Ga0075365_1000191013 655
5 3300013296 Ga0157374_10000115 Ga0157374_1000011534 657
6 3300006038 Ga0075365_10000101 Ga0075365_1000010110 660
7 3300050492 nmdc:mga0yw44_73_c1 nmdc:mga0yw44_73_c1_17812_19833 661
8 3300053087 Ga0500643_000148 Ga0500643_000148_33146_35182 661
9 3300009979 Ga0105032_100001 Ga0105032_100001395 663
10 3300048918 Ga0496115_0000405 Ga0496115_0000405_10179_12182 666
11 3300005327 Ga0070658_10012877 Ga0070658_100128774 667
12 3300006042 Ga0075368_10000073 Ga0075368_1000007311 667
13 3300006186 Ga0075369_10023717 Ga0075369_100237172 667
14 3300013296 Ga0157374_10003322 Ga0157374_1000332210 667
15 3300025909 Ga0207705_10018523 Ga0207705_100185232 667
16 3300027866 Ga0209813_10000242 Ga0209813_1000024214 667
17 3300037471 Ga0395905_0002458 Ga0395905_0002458_2910_4913 667
18 3300050491 nmdc:mga00v17_267_c1 nmdc:mga00v17_267_c1_14871_16889 667
19 3300050492 nmdc:mga0yw44_4_c1 nmdc:mga0yw44_4_c1_259424_261442 667
20 3300050496 nmdc:mga07m45_29419_c1 nmdc:mga07m45_29419_c1_338_2356 667
21 3300005355 Ga0070671_100065938 Ga0070671_1000659382 668
22 3300005356 Ga0070674_100025093 Ga0070674_1000250931 668
23 3300005466 Ga0070685_10011269 Ga0070685_100112695 668
24 3300005841 Ga0068863_100043946 Ga0068863_1000439463 668
25 3300009176 Ga0105242_10001796 Ga0105242_100017967 668
26 3300025934 Ga0207686_10001892 Ga0207686_100018927 668
27 3300026088 Ga0207641_10056131 Ga0207641_100561313 668
28 3300028800 Ga0265338_10009927 Ga0265338_1000992712 668
29 3300053093 Ga0500651_0000050 Ga0500651_0000050_39315_41321 668
30 3300053123 Ga0500614_001840 Ga0500614_001840_1183_3189 668
31 3300005327 Ga0070658_10000012 Ga0070658_10000012169 669
32 3300005327 Ga0070658_10005369 Ga0070658_100053695 669
33 3300005364 Ga0070673_100000192 Ga0070673_10000019227 669
34 3300005456 Ga0070678_100000895 Ga0070678_1000008953 669
35 3300005458 Ga0070681_10009951 Ga0070681_100099514 669
36 3300005466 Ga0070685_10000589 Ga0070685_1000058920 669
37 3300009174 Ga0105241_10009986 Ga0105241_100099865 669
38 3300025909 Ga0207705_10000038 Ga0207705_10000038136 669
39 3300025912 Ga0207707_10012148 Ga0207707_100121486 669
40 3300025937 Ga0207669_10013171 Ga0207669_100131715 669
41 3300026121 Ga0207683_10002815 Ga0207683_1000281513 669
42 3300037312 Ga0395899_0045861 Ga0395899_0045861_194_2203 669
43 3300038443 Ga0395901_0001243 Ga0395901_0001243_725_2734 669
44 3300053090 Ga0500646_0001843 Ga0500646_0001843_1838_3847 669
45 3300053098 Ga0500650_0000001 Ga0500650_0000001_570055_572064 669
46 3300053118 Ga0500594_0000001 Ga0500594_0000001_53619_55628 669
47 3300053142 Ga0500577_0004911 Ga0500577_0004911_1279_3288 669
48 3300053143 Ga0500579_000688 Ga0500579_000688_8580_10589 669
49 3300006881 Ga0068865_100010668 Ga0068865_1000106683 670
50 3300009093 Ga0105240_10000003 Ga0105240_10000003917 670
51 3300009098 Ga0105245_10000050 Ga0105245_1000005056 670
52 3300009148 Ga0105243_10000001 Ga0105243_10000001374 670
53 3300009176 Ga0105242_10000011 Ga0105242_1000001177 670
54 3300009545 Ga0105237_10097940 Ga0105237_100979401 670
55 3300013297 Ga0157378_10025856 Ga0157378_100258562 670
56 3300025913 Ga0207695_10000005 Ga0207695_10000005927 670
57 3300025914 Ga0207671_10030290 Ga0207671_100302902 670
58 3300025927 Ga0207687_10000375 Ga0207687_100003754 670
59 3300025934 Ga0207686_10000001 Ga0207686_10000001768 670
60 3300025935 Ga0207709_10000002 Ga0207709_10000002886 670
61 3300028379 Ga0268266_10002852 Ga0268266_1000285217 670
62 3300031730 Ga0307516_10002903 Ga0307516_100029037 670
63 3300031731 Ga0307405_10010325 Ga0307405_100103253 670
64 3300042156 Ga0439446_0000003 Ga0439446_0000003_22690_24702 670
65 3300042185 Ga0450909_002328 Ga0450909_002328_161_2173 670
66 3300053142 Ga0500577_0008981 Ga0500577_0008981_212_2224 670
67 3300005577 Ga0068857_100000829 Ga0068857_10000082921 671
68 3300005616 Ga0068852_100000001 Ga0068852_100000001450 671
69 3300009545 Ga0105237_10000002 Ga0105237_10000002345 671
70 3300009551 Ga0105238_10064883 Ga0105238_100648832 671
71 3300013307 Ga0157372_10000160 Ga0157372_1000016063 671
72 3300014969 Ga0157376_10000007 Ga0157376_10000007393 671
73 3300025914 Ga0207671_10000008 Ga0207671_10000008449 671
74 3300026116 Ga0207674_10000439 Ga0207674_1000043910 671
75 3300026142 Ga0207698_10000001 Ga0207698_10000001402 671
76 3300030742 Ga0316183_1147623 Ga0316183_11476233 671
77 3300047320 Ga0495672_0000010 Ga0495672_0000010_533918_535936 671
78 3300050492 nmdc:mga0yw44_378_c1 nmdc:mga0yw44_378_c1_4261_6279 671
79 3300030734 Ga0316179_1046099 Ga0316179_104609912 672
80 3300030742 Ga0316183_1076438 Ga0316183_10764382 672
81 3300030744 Ga0316181_1271452 Ga0316181_127145210 672
82 3300030745 Ga0316182_1244816 Ga0316182_124481630 672
83 3300053087 Ga0500643_000043 Ga0500643_000043_49733_51754 672
84 3300003323 rootH1_10057568 rootH1_1005756819 673
85 3300005563 Ga0068855_100000005 Ga0068855_100000005407 673
86 3300005937 Ga0081455_10000001 Ga0081455_10000001367 673
87 3300009979 Ga0105032_100015 Ga0105032_1000156 673
88 3300013102 Ga0157371_10000105 Ga0157371_100001058 673
89 3300025913 Ga0207695_10003887 Ga0207695_1000388721 673
90 3300025949 Ga0207667_10000027 Ga0207667_10000027400 673
91 3300030742 Ga0316183_1155615 Ga0316183_11556158 673
92 3300031901 Ga0307406_10000001 Ga0307406_10000001219 673
93 3300031901 Ga0307406_10000901 Ga0307406_100009012 673
94 3300044683 Ga0466965_0000138 Ga0466965_0000138_17816_19837 673
95 3300046683 Ga0495658_0003128 Ga0495658_0003128_3290_5323 673
96 3300046809 Ga0495600_0018837 Ga0495600_0018837_1394_3427 673
97 3300053094 Ga0500566_0000001 Ga0500566_0000001_498099_500132 673
98 3300053118 Ga0500594_0000082 Ga0500594_0000082_9263_11287 673
99 3300053129 Ga0500628_000063 Ga0500628_000063_13826_15850 673
100 3300006237 Ga0097621_100000275 Ga0097621_10000027538 674
101 3300006358 Ga0068871_100000038 Ga0068871_10000003867 674
102 3300009098 Ga0105245_10000044 Ga0105245_100000444 674
103 3300013296 Ga0157374_10000058 Ga0157374_10000058118 674
104 3300025927 Ga0207687_10000033 Ga0207687_100000334 674
105 3300046460 Ga0495638_0000551 Ga0495638_0000551_7767_9794 674
106 3300053109 Ga0500569_000018 Ga0500569_000018_7767_9794 674
107 3300006195 Ga0075366_10000196 Ga0075366_1000019614 675
108 3300006195 Ga0075366_10000200 Ga0075366_100002009 675
109 3300009174 Ga0105241_10000003 Ga0105241_10000003369 675
110 3300009993 Ga0105028_100668 Ga0105028_1006682 675
111 3300013100 Ga0157373_10018198 Ga0157373_100181984 675
112 3300013105 Ga0157369_10000505 Ga0157369_1000050539 675
113 3300025911 Ga0207654_10000002 Ga0207654_10000002838 675
114 3300025949 Ga0207667_10000003 Ga0207667_1000000370 675
115 3300050493 nmdc:mga0k408_118_c2 nmdc:mga0k408_118_c2_8271_10301 675
116 3300001989 JGI24739J22299_10001318 JGI24739J22299_100013187 676
117 3300001990 JGI24737J22298_10003932 JGI24737J22298_100039327 676
118 3300002067 JGI24735J21928_10000064 JGI24735J21928_100000645 676
119 3300005329 Ga0070683_100013289 Ga0070683_1000132896 676
120 3300005366 Ga0070659_100017909 Ga0070659_1000179096 676
121 3300006195 Ga0075366_10034959 Ga0075366_100349591 676
122 3300009098 Ga0105245_10073517 Ga0105245_100735173 676
123 3300011119 Ga0105246_10007755 Ga0105246_100077556 676
124 3300013100 Ga0157373_10025342 Ga0157373_100253424 676
125 3300013104 Ga0157370_10004174 Ga0157370_1000417416 676
126 3300025904 Ga0207647_10000402 Ga0207647_100004027 676
127 3300025932 Ga0207690_10069324 Ga0207690_100693242 676
128 3300025933 Ga0207706_10000090 Ga0207706_1000009061 676
129 3300025944 Ga0207661_10001040 Ga0207661_1000104020 676
130 3300025945 Ga0207679_10000142 Ga0207679_100001423 676
131 3300042016 Ga0439463_003187 Ga0439463_003187_342_2372 676
132 3300050491 nmdc:mga00v17_3189_c1 nmdc:mga00v17_3189_c1_6221_8251 676
133 3300050493 nmdc:mga0k408_2802_c2 nmdc:mga0k408_2802_c2_5128_7158 676
134 3300005367 Ga0070667_100000001 Ga0070667_100000001597 677
135 3300005614 Ga0068856_100000027 Ga0068856_10000002781 677
136 3300005616 Ga0068852_100000108 Ga0068852_10000010854 677
137 3300009093 Ga0105240_10004657 Ga0105240_1000465721 677
138 3300011119 Ga0105246_10001052 Ga0105246_1000105214 677
139 3300013100 Ga0157373_10007549 Ga0157373_100075492 677
140 3300013104 Ga0157370_10000220 Ga0157370_1000022029 677
141 3300013105 Ga0157369_10000075 Ga0157369_1000007561 677
142 3300014969 Ga0157376_10000083 Ga0157376_1000008372 677
143 3300025986 Ga0207658_10000003 Ga0207658_10000003784 677
144 3300026078 Ga0207702_10000015 Ga0207702_1000001537 677
145 3300026078 Ga0207702_10000034 Ga0207702_1000003437 677
146 3300026142 Ga0207698_10000048 Ga0207698_1000004881 677
147 3300001979 JGI24740J21852_10012657 JGI24740J21852_100126572 678

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

322

398

0.98

PF12826

HHH_2

Helix-hairpin-helix motif

542

605

0.98

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

65

319

0.97

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

619

696

0.95

PF14520

HHH_5

Helix-hairpin-helix domain

545

598

0.95

PF14520

HHH_5

Helix-hairpin-helix domain

477

534

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jsl-assembly1.cif.gz_B crystal structure of the adenylation domain of nad+-dependent dna ligase from staphylococcus aureus 0.9465 13 324
5fpo-assembly1.cif.gz_A structure of bacterial dna ligase with small-molecule ligand 1h- indazol-7-amine (at4213) in an alternate binding site. 0.9461 13 325
3jsn-assembly1.cif.gz_A crystal structure of the adenylation domain of nad+-dependent dna ligase from staphylococcus aureus 0.9415 13 324
1b04-assembly1.cif.gz_A structure of the adenylation domain of an nad+ dependent ligase 0.941 7 325
3pn1-assembly1.cif.gz_A novel bacterial nad+-dependent dna ligase inhibitors with broad spectrum potency and antibacterial efficacy in vivo 0.9315 11 325
ID Description Score Start End Superfamily
4ucvA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9888 12 67 1.10.287.610
4uctA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9883 11 67 1.10.287.610
4ucuA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9874 11 67 1.10.287.610
3pn1A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9864 11 67 1.10.287.610
4ucoA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9861 11 67 1.10.287.610
ID Description Score Start End GO Terms
AF-A0A563DEI1-F1-model_v4 NAD-dependent DNA ligase LigA 0.9761 1 271 GO:0003911
GO:0005829
GO:0006288
AF-A0A563DEI1-F1-model_v4 NAD-dependent DNA ligase LigA 0.9725 1 271 GO:0003911
GO:0005829
GO:0006288
AF-A0A0F8XGD4-F1-model_v4 NAD-dependent DNA ligase N-terminal domain-containing protein 0.9702 8 163 GO:0003911
AF-A0A660M0H3-F1-model_v4 NAD-dependent DNA ligase LigA 0.9641 1 231 GO:0003911
GO:0006281
AF-A0A381GIS6-F1-model_v4 deleted 0.9627 443 596

Feature Viewer

pLDDT pTM Quality
84.52 0.58 Medium
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Predicted Structure (AlphaFold2)

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