F181663

General Info

Members Datasets Scaffolds Average Seq Length
141 115 137 382

Family's Representative Sequence

Representative Sequence 3300005338|Ga0068868_100000255|Ga0068868_10000025520
Length 401
Sequence MLGSIYIGLSGLTAYSRGLQTISNNVTNLNTPGFKATSFTFADSFSYGGIGASFSRYVGGQQLGTGVRYGHESIDFRQGDLRQSGGDLDFSIQGSGLLTLLNGDRTYYSRTGQFTVDKDGFIADSASGYRLGVLNSSGQAVAVSVDANRTNAPAATTRITFDGNLSSTAESAVNVADLAVYDSSGQRHVWKVTFEKVGATAPGEWKVTVTDGTTVITDPDHPPILKFIGSSVDPANATITIATTPAGADPQSVVLDFSGDVDSFSSGTLSTLRAAKVDGRGLGSLTSVTLDDTGQLKLTYSNQESELLGFVAIADVRDPQRLERVGTGLFRDAGGAGIRLLGSGQDGIGKLVSRQIEASNVDLSQQFGDLILVQRGFQASSQVISISNDMIQQLFGIRGQG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
3 2773857673 Pseudomonas sp. 443 Isolate Unclassified
4 2851153111 Caulobacter radicis 736 Isolate Unclassified
5 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
6 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
30 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
39 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
41 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
64 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
65 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
69 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
70 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
71 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
72 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
73 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
74 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
75 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
76 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
77 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
78 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
79 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
80 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
81 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
82 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
83 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
84 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
85 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
86 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
87 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
88 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
89 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
90 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
91 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
92 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
93 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
94 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
95 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
96 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
97 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
100 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
103 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
104 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
105 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
106 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
107 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
108 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
109 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
110 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
111 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
112 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
113 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
114 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.16
Metatranscriptomes 0
Isolates 2.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.02
Nodule 0
Rhizoplane 2.84
Rhizosphere 70.21
Stem 0
Stem Tuber 0
Unclassified 9.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1675143 2162886007 Bacteria 8587
2 Ga0055530_10000044 3300003791 Bacteria 110073
3 Ga0055531_10000072 3300003794 Bacteria 110069
4 Ga0065165_1003502 3300005262 Bacteria 10912
5 Ga0065704_10000335 3300005289 Bacteria 35581
6 Ga0068869_100134383 3300005334 Bacteria 1904
7 Ga0068869_100240846 3300005334 Bacteria 1441
8 Ga0068868_100000255 3300005338 Bacteria 36333
9 Ga0070660_100000961 3300005339 Bacteria 19268
10 Ga0070660_100122199 3300005339 Bacteria 2078
11 Ga0070661_100000018 3300005344 Bacteria 135723
12 Ga0070669_100000654 3300005353 Bacteria 25634
13 Ga0070659_100000025 3300005366 Bacteria 144955
14 Ga0070694_100003369 3300005444 Bacteria 9572
15 Ga0070665_100072981 3300005548 Bacteria 3439
16 Ga0068855_100004462 3300005563 Bacteria 17108
17 Ga0068855_100234819 3300005563 Bacteria 2051
18 Ga0068854_100000178 3300005578 Bacteria 43519
19 Ga0068852_100098163 3300005616 Bacteria 2637
20 Ga0068859_100008181 3300005617 Bacteria 10608
21 Ga0068859_100050127 3300005617 Bacteria 4194
22 Ga0068861_100000001 3300005719 Bacteria 116118
23 Ga0068860_100001294 3300005843 Bacteria 27190
24 Ga0068860_100011744 3300005843 Bacteria 8630
25 Ga0068860_100103691 3300005843 Bacteria 2715
26 Ga0068862_100000191 3300005844 Bacteria 67742
27 Ga0068862_100003265 3300005844 Bacteria 14033
28 Ga0081539_10027806 3300005985 Bacteria 3573
29 Ga0075370_10116948 3300006353 Bacteria 1550
30 Ga0075434_100134538 3300006871 Bacteria 2492
31 Ga0097620_100008181 3300006931 Bacteria 10608
32 Ga0097620_100050123 3300006931 Bacteria 4194
33 Ga0105251_10000132 3300009011 Bacteria 75189
34 Ga0105251_10000943 3300009011 Bacteria 25987
35 Ga0105250_10000331 3300009092 Bacteria 36529
36 Ga0105245_10003720 3300009098 Bacteria 13590
37 Ga0105247_10024543 3300009101 Bacteria 3634
38 Ga0105248_10076027 3300009177 Bacteria 3774
39 Ga0105238_10268143 3300009551 Bacteria 1688
40 Ga0105238_10370065 3300009551 Bacteria 1423
41 Ga0105249_10000874 3300009553 Bacteria 26758
42 Ga0105249_10041994 3300009553 Bacteria 4158
43 Ga0105249_10058815 3300009553 Unclassified 3524
44 Ga0157369_10000828 3300013105 Bacteria 39560
45 Ga0157369_10104411 3300013105 Bacteria 3017
46 Ga0157374_10003946 3300013296 Bacteria 12470
47 Ga0182006_1022581 3300015261 Bacteria 2614
48 Ga0209676_1026271 3300025292 Bacteria 1852
49 Ga0209758_1001878 3300025297 Bacteria 23002
50 Ga0209758_1002778 3300025297 Bacteria 17142
51 Ga0209758_1006256 3300025297 Bacteria 8666
52 Ga0209050_1000014 3300025298 Bacteria 774327
53 Ga0209050_1001936 3300025298 Bacteria 19689
54 Ga0209257_1000019 3300025304 Bacteria 774261
55 Ga0209257_1004051 3300025304 Bacteria 11776
56 Ga0207696_1000359 3300025711 Bacteria 45875
57 Ga0207713_1000224 3300025735 Bacteria 76504
58 Ga0207713_1001181 3300025735 Bacteria 22022
59 Ga0207647_10007994 3300025904 Bacteria 7605
60 Ga0207705_10016398 3300025909 Bacteria 5311
61 Ga0207657_10006551 3300025919 Bacteria 12056
62 Ga0207657_10038713 3300025919 Bacteria 4242
63 Ga0207649_10000034 3300025920 Bacteria 136049
64 Ga0207681_10000478 3300025923 Bacteria 27965
65 Ga0207694_10138466 3300025924 Bacteria 1956
66 Ga0207690_10000005 3300025932 Bacteria 581199
67 Ga0207706_10080333 3300025933 Bacteria 2867
68 Ga0207691_10062339 3300025940 Bacteria 3384
69 Ga0207689_10267390 3300025942 Bacteria 1415
70 Ga0207667_10001055 3300025949 Bacteria 34969
71 Ga0207712_10000597 3300025961 Bacteria 28909
72 Ga0207712_10033245 3300025961 Unclassified 3485
73 Ga0207640_10000605 3300025981 Bacteria 21224
74 Ga0207677_10000059 3300026023 Bacteria 94553
75 Ga0207675_100000196 3300026118 Bacteria 55631
76 Ga0268266_10003940 3300028379 Bacteria 14430
77 Ga0268265_10000271 3300028380 Bacteria 58874
78 Ga0268265_10043658 3300028380 Unclassified 3334
79 Ga0268264_10001022 3300028381 Bacteria 28163
80 Ga0268264_10007650 3300028381 Bacteria 9005
81 Ga0268264_10018182 3300028381 Bacteria 5748
82 Ga0265320_10000202 3300031240 Bacteria 48735
83 Ga0265325_10004788 3300031241 Bacteria 8480
84 Ga0307513_10101383 3300031456 Bacteria 2900
85 Ga0307412_10001874 3300031911 Bacteria 11637
86 Ga0307416_100007784 3300032002 Bacteria 6850
87 Ga0307510_10000656 3300033180 Bacteria 35105
88 Ga0395905_0069350 3300037471 Unclassified 3302
89 Ga0395905_0133754 3300037471 Bacteria 2333
90 Ga0439436_0031406 3300041404 Bacteria 1541
91 Ga0439461_0000635 3300041410 Bacteria 5063
92 Ga0439466_0026989 3300041411 Bacteria 1992
93 Ga0439465_0000020 3300041413 Bacteria 32731
94 Ga0439431_0000030 3300041997 Bacteria 22183
95 Ga0439432_000484 3300042006 Bacteria 14868
96 Ga0439462_0000418 3300042015 Bacteria 8233
97 Ga0450904_000102 3300042139 Bacteria 19193
98 Ga0439434_0000023 3300042435 Bacteria 37093
99 Ga0495627_000328 3300046453 Bacteria 45660
100 Ga0495638_0000137 3300046460 Bacteria 116065
101 Ga0495650_0000820 3300046471 Bacteria 37855
102 Ga0495597_0051456 3300046542 Bacteria 1816
103 Ga0495625_0000034 3300046660 Bacteria 225120
104 Ga0495625_0000092 3300046660 Bacteria 146172
105 Ga0495670_0047223 3300046691 Bacteria 2152
106 Ga0495649_0000346 3300046694 Bacteria 39819
107 Ga0495672_0001062 3300047320 Bacteria 28044
108 Ga0495686_0027414 3300047472 Bacteria 3719
109 Ga0495686_0029914 3300047472 Bacteria 3539
110 Ga0496104_0000374 3300048907 Bacteria 39571
111 Ga0496105_0000196 3300048908 Bacteria 40474
112 Ga0496114_0173171 3300048917 Bacteria 1882
113 Ga0496115_0017177 3300048918 Bacteria 5524
114 Ga0496116_0007084 3300048919 Bacteria 10037
115 Ga0496117_0000883 3300048920 Bacteria 46186
116 Ga0496118_0000911 3300048921 Bacteria 46185
117 Ga0496119_0000672 3300048922 Bacteria 45818
118 Ga0496120_0002404 3300048923 Bacteria 19034
119 Ga0496121_0001479 3300048924 Bacteria 39563
120 Ga0496122_0003672 3300048925 Bacteria 19907
121 Ga0496123_0005780 3300048926 Bacteria 12287
122 Ga0496124_0010711 3300048927 Bacteria 9249
123 Ga0501047_0000761 3300049581 Bacteria 33700
124 Ga0501226_000059 3300049853 Bacteria 36804
125 nmdc:mga07m45_71685_c1 3300050496 Bacteria 1971
126 Ga0500643_000619 3300053087 Bacteria 24051
127 Ga0500644_0000550 3300053088 Bacteria 15148
128 Ga0500651_0004350 3300053093 Bacteria 7918
129 Ga0500641_0064889 3300053096 Bacteria 1526
130 Ga0500562_028497 3300053108 Bacteria 1468
131 Ga0500655_000032 3300053133 Bacteria 38938
132 Ga0500658_0003169 3300053134 Bacteria 6274
133 Ga0500573_0000090 3300053140 Bacteria 41819
134 Ga0500570_000225 3300053724 Bacteria 18527
135 Ga0500645_000591 3300053730 Bacteria 23415
136 Ga0500596_003081 3300053735 Bacteria 3204
137 Ga0501082_0003652 3300060353 Bacteria 13437

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005334 Ga0068869_100134383 Ga0068869_1001343831 308
2 3300005548 Ga0070665_100072981 Ga0070665_1000729812 308
3 3300025942 Ga0207689_10267390 Ga0207689_102673901 308
4 3300028379 Ga0268266_10003940 Ga0268266_1000394016 308
5 3300005444 Ga0070694_100003369 Ga0070694_10000336912 311
6 3300025933 Ga0207706_10080333 Ga0207706_100803333 311
7 3300005339 Ga0070660_100122199 Ga0070660_1001221991 324
8 3300005563 Ga0068855_100234819 Ga0068855_1002348191 324
9 3300025919 Ga0207657_10038713 Ga0207657_100387133 324
10 3300037471 Ga0395905_0133754 Ga0395905_0133754_444_1694 324
11 3300037471 Ga0395905_0069350 Ga0395905_0069350_150_1343 335
12 3300046660 Ga0495625_0000034 Ga0495625_0000034_151665_152861 342
13 3300053096 Ga0500641_0064889 Ga0500641_0064889_322_1497 346
14 3300025292 Ga0209676_1026271 Ga0209676_10262712 347
15 3300046694 Ga0495649_0000346 Ga0495649_0000346_11447_12625 350
16 3300053724 Ga0500570_000225 Ga0500570_000225_13639_14832 351
17 3300009551 Ga0105238_10370065 Ga0105238_103700652 352
18 3300025924 Ga0207694_10138466 Ga0207694_101384662 352
19 3300047320 Ga0495672_0001062 Ga0495672_0001062_7877_9067 353
20 3300053134 Ga0500658_0003169 Ga0500658_0003169_3199_4377 353
21 3300047472 Ga0495686_0027414 Ga0495686_0027414_1517_2701 354
22 3300005617 Ga0068859_100008181 Ga0068859_10000818112 355
23 3300006931 Ga0097620_100008181 Ga0097620_1000081814 355
24 3300041410 Ga0439461_0000635 Ga0439461_0000635_14_1132 355
25 3300053087 Ga0500643_000619 Ga0500643_000619_1540_2715 356
26 3300005334 Ga0068869_100240846 Ga0068869_1002408462 357
27 3300025297 Ga0209758_1006256 Ga0209758_100625610 357
28 3300053088 Ga0500644_0000550 Ga0500644_0000550_11542_12717 357
29 3300053093 Ga0500651_0004350 Ga0500651_0004350_4543_5718 357
30 3300053735 Ga0500596_003081 Ga0500596_003081_1206_2393 357
31 3300005262 Ga0065165_1003502 Ga0065165_100350213 358
32 3300025297 Ga0209758_1002778 Ga0209758_100277815 358
33 3300025298 Ga0209050_1001936 Ga0209050_10019368 358
34 3300003791 Ga0055530_10000044 Ga0055530_1000004442 363
35 3300003794 Ga0055531_10000072 Ga0055531_1000007241 363
36 3300025298 Ga0209050_1000014 Ga0209050_1000014649 363
37 3300025304 Ga0209257_1000019 Ga0209257_100001943 363
38 3300060353 Ga0501082_0003652 Ga0501082_0003652_11391_12527 364
39 3300005344 Ga0070661_100000018 Ga0070661_10000001845 366
40 3300013105 Ga0157369_10000828 Ga0157369_100008286 366
41 3300025920 Ga0207649_10000034 Ga0207649_1000003446 366
42 3300005563 Ga0068855_100004462 Ga0068855_10000446212 367
43 3300005578 Ga0068854_100000178 Ga0068854_10000017819 367
44 3300025949 Ga0207667_10001055 Ga0207667_1000105519 367
45 3300025981 Ga0207640_10000605 Ga0207640_100006055 367
46 3300025304 Ga0209257_1004051 Ga0209257_100405112 368
47 3300041404 Ga0439436_0031406 Ga0439436_0031406_295_1476 368
48 3300041411 Ga0439466_0026989 Ga0439466_0026989_560_1741 368
49 3300041413 Ga0439465_0000020 Ga0439465_0000020_25548_26729 368
50 3300041997 Ga0439431_0000030 Ga0439431_0000030_1317_2498 368
51 3300042006 Ga0439432_000484 Ga0439432_000484_4410_5591 368
52 3300042015 Ga0439462_0000418 Ga0439462_0000418_2493_3674 368
53 3300042139 Ga0450904_000102 Ga0450904_000102_11236_12402 368
54 3300042435 Ga0439434_0000023 Ga0439434_0000023_10664_11845 368
55 3300049853 Ga0501226_000059 Ga0501226_000059_23534_24700 368
56 3300015261 Ga0182006_1022581 Ga0182006_10225813 369
57 iso_pu_bacteria 2773857673 2774137727 369
58 3300005843 Ga0068860_100103691 Ga0068860_1001036912 370
59 3300009551 Ga0105238_10268143 Ga0105238_102681432 370
60 3300028381 Ga0268264_10018182 Ga0268264_100181827 370
61 3300031240 Ga0265320_10000202 Ga0265320_1000020210 370
62 3300031241 Ga0265325_10004788 Ga0265325_1000478810 370
63 3300005843 Ga0068860_100011744 Ga0068860_1000117443 371
64 3300028381 Ga0268264_10007650 Ga0268264_1000765010 371
65 3300005616 Ga0068852_100098163 Ga0068852_1000981632 372
66 3300005985 Ga0081539_10027806 Ga0081539_100278062 372
67 3300046691 Ga0495670_0047223 Ga0495670_0047223_62_1225 372
68 3300049581 Ga0501047_0000761 Ga0501047_0000761_8460_9614 374
69 3300025904 Ga0207647_10007994 Ga0207647_100079942 377
70 3300025940 Ga0207691_10062339 Ga0207691_100623395 377
71 3300033180 Ga0307510_10000656 Ga0307510_1000065619 377
72 3300046471 Ga0495650_0000820 Ga0495650_0000820_17949_19145 377
73 3300009177 Ga0105248_10076027 Ga0105248_100760273 378
74 3300005338 Ga0068868_100000255 Ga0068868_10000025520 380
75 3300005339 Ga0070660_100000961 Ga0070660_10000096112 380
76 3300005366 Ga0070659_100000025 Ga0070659_10000002528 380
77 3300005617 Ga0068859_100050127 Ga0068859_1000501272 380
78 3300005719 Ga0068861_100000001 Ga0068861_10000000120 380
79 3300005843 Ga0068860_100001294 Ga0068860_10000129423 380
80 3300005844 Ga0068862_100000191 Ga0068862_10000019149 380
81 3300006931 Ga0097620_100050123 Ga0097620_1000501232 380
82 3300009101 Ga0105247_10024543 Ga0105247_100245434 380
83 3300009553 Ga0105249_10000874 Ga0105249_100008744 380
84 3300025919 Ga0207657_10006551 Ga0207657_100065515 380
85 3300025932 Ga0207690_10000005 Ga0207690_10000005448 380
86 3300025961 Ga0207712_10000597 Ga0207712_100005977 380
87 3300026023 Ga0207677_10000059 Ga0207677_1000005934 380
88 3300026118 Ga0207675_100000196 Ga0207675_10000019620 380
89 3300028380 Ga0268265_10000271 Ga0268265_100002719 380
90 3300028381 Ga0268264_10001022 Ga0268264_100010229 380
91 3300031456 Ga0307513_10101383 Ga0307513_101013833 380
92 3300046542 Ga0495597_0051456 Ga0495597_0051456_478_1659 380
93 3300046660 Ga0495625_0000092 Ga0495625_0000092_120744_121925 380
94 3300005353 Ga0070669_100000654 Ga0070669_10000065429 381
95 3300006353 Ga0075370_10116948 Ga0075370_101169482 381
96 3300009011 Ga0105251_10000943 Ga0105251_1000094329 381
97 3300025735 Ga0207713_1001181 Ga0207713_100118122 381
98 3300025923 Ga0207681_10000478 Ga0207681_1000047811 381
99 3300031911 Ga0307412_10001874 Ga0307412_100018745 381
100 3300032002 Ga0307416_100007784 Ga0307416_1000077846 381
101 3300046453 Ga0495627_000328 Ga0495627_000328_14222_15412 381
102 3300048918 Ga0496115_0017177 Ga0496115_0017177_463_1668 381
103 3300050496 nmdc:mga07m45_71685_c1 nmdc:mga07m45_71685_c1_345_1535 381
104 iso_pu_bacteria 2941485952 2941486418 381
105 3300006871 Ga0075434_100134538 Ga0075434_1001345382 382
106 3300009098 Ga0105245_10003720 Ga0105245_100037203 382
107 3300025297 Ga0209758_1001878 Ga0209758_100187812 382
108 3300046460 Ga0495638_0000137 Ga0495638_0000137_8943_10136 382
109 3300047472 Ga0495686_0029914 Ga0495686_0029914_1279_2478 382
110 3300048917 Ga0496114_0173171 Ga0496114_0173171_115_1308 382
111 3300053133 Ga0500655_000032 Ga0500655_000032_20841_22034 382
112 3300053730 Ga0500645_000591 Ga0500645_000591_21854_23047 382
113 iso_pu_bacteria 2851153111 2851155331 382
114 2162886007 SwRhRL2b_contig_1675143 SwRhRL2b_0207.00006110 383
115 3300005289 Ga0065704_10000335 Ga0065704_1000033515 383
116 3300005844 Ga0068862_100003265 Ga0068862_10000326513 383
117 3300009011 Ga0105251_10000132 Ga0105251_1000013262 383
118 3300009092 Ga0105250_10000331 Ga0105250_1000033119 383
119 3300009553 Ga0105249_10041994 Ga0105249_100419942 383
120 3300009553 Ga0105249_10058815 Ga0105249_100588152 383
121 3300013105 Ga0157369_10104411 Ga0157369_101044114 383
122 3300013296 Ga0157374_10003946 Ga0157374_100039463 383
123 3300025711 Ga0207696_1000359 Ga0207696_100035917 383
124 3300025735 Ga0207713_1000224 Ga0207713_100022460 383
125 3300025909 Ga0207705_10016398 Ga0207705_100163985 383
126 3300025961 Ga0207712_10033245 Ga0207712_100332455 383
127 3300028380 Ga0268265_10043658 Ga0268265_100436583 383
128 3300048907 Ga0496104_0000374 Ga0496104_0000374_13572_14747 383
129 3300048908 Ga0496105_0000196 Ga0496105_0000196_13572_14747 383
130 3300048919 Ga0496116_0007084 Ga0496116_0007084_1179_2354 383
131 3300048920 Ga0496117_0000883 Ga0496117_0000883_13236_14411 383
132 3300048921 Ga0496118_0000911 Ga0496118_0000911_13236_14411 383
133 3300048922 Ga0496119_0000672 Ga0496119_0000672_13572_14747 383
134 3300048923 Ga0496120_0002404 Ga0496120_0002404_13570_14745 383
135 3300048924 Ga0496121_0001479 Ga0496121_0001479_21531_22706 383
136 3300048925 Ga0496122_0003672 Ga0496122_0003672_4797_5972 383
137 3300048926 Ga0496123_0005780 Ga0496123_0005780_2733_3908 383
138 3300048927 Ga0496124_0010711 Ga0496124_0010711_6750_7925 383
139 3300053108 Ga0500562_028497 Ga0500562_028497_115_1302 383
140 3300053140 Ga0500573_0000090 Ga0500573_0000090_15573_16754 383
141 iso_pu_bacteria 2643221622 2644128672 383

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00460

Flg_bb_rod

Flagella basal body rod protein

5

35

0.98

PF06429

Flg_bbr_C

Flagellar basal body rod FlgEFG protein C-terminal

352

397

0.94

PF22692

LlgE_F_G_D1

Flagellar hook protein FlgE/F/G D1 domain

91

168

0.77

PF07559

FlgE_D2

Flagellar basal body protein FlaE D2 domain

144

310

0.57

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cgo-assembly1.cif.gz_P cryo-em structure of the flagellar motor-hook complex from salmonella 0.8534 2 378
7cgo-assembly1.cif.gz_Q cryo-em structure of the flagellar motor-hook complex from salmonella 0.8532 2 378
7cgo-assembly1.cif.gz_N cryo-em structure of the flagellar motor-hook complex from salmonella 0.8408 2 378
7nvg-assembly1.cif.gz_l2 salmonella flagellar basal body refined in c1 map 0.8374 2 378
7cgo-assembly1.cif.gz_R cryo-em structure of the flagellar motor-hook complex from salmonella 0.8357 2 378
ID Description Score Start End Superfamily
af_Q5XVJ3_12_175_3.40.1000.30 Alpha Beta;3-Layer(aba) Sandwich;Protein Transport Mog1p; Chain A; 0.8655 178 209 3.40.1000.30
af_A0A0P0XPG5_17_403_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8156 265 289 3.50.50.60
af_Q4DVH6_123_446_3.60.21.10 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.7825 180 209 3.60.21.10
af_Q2FVP8_1_145_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.7787 265 289 3.50.50.60
af_G5EDG8_2_147_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.7704 265 290 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A2D7KBP0-F1-model_v4 deleted 0.9396 2 382
AF-W0ACM5-F1-model_v4 Flagellar hook protein FlgE 0.9309 2 383 GO:0005829
GO:0009424
GO:0009425
GO:0071978
AF-A0A2D7KBP0-F1-model_v4 deleted 0.9277 2 382
AF-W0ACM5-F1-model_v4 Flagellar hook protein FlgE 0.9262 2 383 GO:0005829
GO:0009424
GO:0009425
GO:0071978
AF-A0A0M3AFB2-F1-model_v4 Flagellar hook protein FlgE 0.9084 2 383 GO:0005829
GO:0009424
GO:0009425
GO:0071978

Feature Viewer

pLDDT pTM Quality
85.64 0.71 High
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Predicted Structure (AlphaFold2)

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