F177240

General Info

Members Datasets Scaffolds Average Seq Length
139 104 139 279

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0000002|Ga0451576_0000002_324469_325479
Length 336
Sequence MICLHFCKRITKLNKKSAEIKLLTIVLAGPSSHTAQTHGAQHGCLAGFNILNNKVLKVVTTRAALRSALDNCRNNGEKIGFVPTMGALHQGHIALVKRAKAENTIAVASVFVNPTQFNDKNDLKHYPRTPEADTAMLEAGGCDFLFMPDAAEMYPDGETFVPDINWGVLDKVMEGAHRPGHFKGVVQIVSRLFDATGPCTAYFGQKDFQQLAVIRRMTHDLKLPVTIVGCPTVREADGLAMSSRNMRLTPAERAVAPLLAAALQRAKSMWPDNDSAAVTKEVLQLLAAEPMIRPDYFEIVDADTLLPVSEGQKKNAVACIAAYLGAVRLIDNMMLS

Samples

Sample ID Description Type Environment
1 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
2 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
23 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
56 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
57 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
58 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
59 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
60 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
61 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
62 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
63 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
64 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
65 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
70 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
71 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
72 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
80 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
85 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
86 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
87 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
88 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
89 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
90 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
91 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
92 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
95 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
96 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
97 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
98 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
99 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
100 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
101 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
102 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
103 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
104 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.28
Metatranscriptomes 0
Isolates 0.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.23
Nodule 0
Rhizoplane 8.63
Rhizosphere 73.38
Stem 0
Stem Tuber 0
Unclassified 5.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24752J21851_1011405 3300001976 Bacteria 1162
2 rootH2_10023887 3300003320 Bacteria 21951
3 rootL2_10083810 3300003322 Bacteria 4089
4 rootH1_10017530 3300003316 Bacteria 4184
5 rootH1_10017530 3300003323 Bacteria 4041
6 Ga0065712_10110019 3300005290 Bacteria 1845
7 Ga0070682_100365134 3300005337 Bacteria 1081
8 Ga0070661_100256456 3300005344 Bacteria 1351
9 Ga0070711_100218862 3300005439 Bacteria 1479
10 Ga0070693_100266229 3300005547 Bacteria 1142
11 Ga0068855_100054197 3300005563 Bacteria 4714
12 Ga0068855_100188791 3300005563 Bacteria 2326
13 Ga0070664_100011944 3300005564 Bacteria 7050
14 Ga0068857_100044257 3300005577 Bacteria 3948
15 Ga0068857_100097073 3300005577 Bacteria 2642
16 Ga0068857_100163571 3300005577 Bacteria 2020
17 Ga0068856_100129738 3300005614 Bacteria 2525
18 Ga0068852_100051076 3300005616 Bacteria 3546
19 Ga0068859_100019575 3300005617 Bacteria 6800
20 Ga0068864_100016835 3300005618 Bacteria 6092
21 Ga0068851_10184437 3300005834 Bacteria 1157
22 Ga0068863_100002397 3300005841 Bacteria 18643
23 Ga0068858_100267302 3300005842 Bacteria 1626
24 Ga0068860_100013526 3300005843 Bacteria 8002
25 Ga0068860_100373941 3300005843 Bacteria 1406
26 Ga0075364_10000542 3300006051 Bacteria 19294
27 Ga0075369_10017684 3300006186 Bacteria 2895
28 Ga0097621_100147506 3300006237 Bacteria 2015
29 Ga0068871_100074299 3300006358 Bacteria 2804
30 Ga0075428_100133493 3300006844 Bacteria 2699
31 Ga0075429_100094315 3300006880 Bacteria 2610
32 Ga0097620_100019575 3300006931 Bacteria 6800
33 Ga0105240_10549453 3300009093 Bacteria 1278
34 Ga0105240_10758840 3300009093 Bacteria 1054
35 Ga0111539_10004460 3300009094 Bacteria 18303
36 Ga0105237_10000826 3300009545 Bacteria 42381
37 Ga0105237_10005300 3300009545 Bacteria 14585
38 Ga0105238_10319493 3300009551 Bacteria 1538
39 Ga0105239_10005215 3300010375 Bacteria 15294
40 Ga0157371_10042799 3300013102 Bacteria 3227
41 Ga0157374_10276597 3300013296 Bacteria 1657
42 Ga0157372_10110466 3300013307 Bacteria 3149
43 Ga0157379_10003770 3300014968 Bacteria 12906
44 Ga0209050_1005223 3300025298 Bacteria 8294
45 Ga0209257_1027405 3300025304 Bacteria 1897
46 Ga0207695_10410184 3300025913 Bacteria 1239
47 Ga0207671_10003697 3300025914 Bacteria 15084
48 Ga0207671_10015681 3300025914 Bacteria 5923
49 Ga0207649_10050825 3300025920 Bacteria 2565
50 Ga0207644_10116392 3300025931 Bacteria 2028
51 Ga0207711_10171788 3300025941 Bacteria 1967
52 Ga0207689_10335493 3300025942 Unclassified 1256
53 Ga0207679_10323751 3300025945 Bacteria 1335
54 Ga0207667_10118946 3300025949 Bacteria 2723
55 Ga0207667_10284997 3300025949 Bacteria 1688
56 Ga0207658_10027210 3300025986 Bacteria 4015
57 Ga0207678_10312217 3300026067 Bacteria 1352
58 Ga0207702_10136938 3300026078 Bacteria 2211
59 Ga0207641_10058048 3300026088 Bacteria 3292
60 Ga0207674_10000660 3300026116 Bacteria 44851
61 Ga0207674_10117327 3300026116 Bacteria 2632
62 Ga0207698_10010165 3300026142 Bacteria 6031
63 Ga0268264_10112428 3300028381 Bacteria 2387
64 Ga0268264_10186606 3300028381 Bacteria 1887
65 Ga0265323_10000379 3300028653 Bacteria 25733
66 Ga0307515_10000251 3300028794 Bacteria 132970
67 Ga0265338_10010893 3300028800 Bacteria 10580
68 Ga0265316_10000445 3300031344 Bacteria 47073
69 Ga0265316_10002843 3300031344 Bacteria 17711
70 Ga0307509_10276088 3300031507 Bacteria 1445
71 Ga0307508_10191804 3300031616 Bacteria 1645
72 Ga0265342_10128542 3300031712 Bacteria 1421
73 Ga0316576_10216196 3300031727 Bacteria 1442
74 Ga0316578_10041194 3300031728 Unclassified 2674
75 Ga0316574_0343483 3300035398 Unclassified 945
76 Ga0395899_0000111 3300037312 Bacteria 138935
77 Ga0395900_0054952 3300037418 Bacteria 4100
78 Ga0395905_0000001 3300037471 Bacteria 2037079
79 Ga0395905_0001154 3300037471 Bacteria 33078
80 Ga0395901_0014652 3300038443 Bacteria 7968
81 Ga0400483_006213 3300039062 Bacteria 91642
82 Ga0451577_0038408 3300042876 Bacteria 4307
83 Ga0451577_0053103 3300042876 Bacteria 3618
84 Ga0451577_0767013 3300042876 Unclassified 872
85 Ga0466969_0027432 3300044656 Bacteria 2916
86 Ga0453683_0000092 3300044673 Bacteria 136648
87 Ga0453683_0003424 3300044673 Bacteria 11699
88 Ga0453683_0006444 3300044673 Bacteria 8057
89 Ga0453683_0321718 3300044673 Bacteria 991
90 Ga0453683_0326607 3300044673 Unclassified 983
91 Ga0453684_0000337 3300044712 Bacteria 195296
92 Ga0453684_0001911 3300044712 Bacteria 53995
93 Ga0453684_0014964 3300044712 Bacteria 12330
94 Ga0453684_0016021 3300044712 Bacteria 11771
95 Ga0453684_0044420 3300044712 Bacteria 5946
96 Ga0453684_0101308 3300044712 Bacteria 3524
97 Ga0453684_0103694 3300044712 Bacteria 3474
98 Ga0453684_0125147 3300044712 Bacteria 3095
99 Ga0453684_0166669 3300044712 Bacteria 2600
100 Ga0453684_0588969 3300044712 Bacteria 1220
101 Ga0466970_0013197 3300044765 Bacteria 4235
102 Ga0466970_0198663 3300044765 Bacteria 1115
103 Ga0466957_0271577 3300044842 Bacteria 1132
104 Ga0466959_0000420 3300045049 Bacteria 24757
105 Ga0451576_0000002 3300045051 Bacteria 1670975
106 Ga0451576_0000369 3300045051 Bacteria 107433
107 Ga0451576_0001334 3300045051 Bacteria 42651
108 Ga0451576_0018376 3300045051 Bacteria 7666
109 Ga0451576_0059733 3300045051 Unclassified 3979
110 Ga0451576_0702718 3300045051 Bacteria 1062
111 Ga0495638_0000004 3300046460 Bacteria 700795
112 Ga0495606_0002264 3300046507 Bacteria 22818
113 Ga0496101_0201456 3300048904 Bacteria 1539
114 Ga0496103_0016959 3300048906 Bacteria 4351
115 Ga0496104_0266587 3300048907 Bacteria 1625
116 Ga0496105_0202903 3300048908 Bacteria 1618
117 Ga0496106_0028708 3300048909 Bacteria 4144
118 Ga0496107_0037266 3300048910 Bacteria 3489
119 Ga0496108_0011510 3300048911 Bacteria 7189
120 Ga0496109_0100728 3300048912 Bacteria 2680
121 Ga0496110_0037453 3300048913 Bacteria 4216
122 Ga0496111_0165272 3300048914 Bacteria 1643
123 Ga0496112_0042329 3300048915 Bacteria 4455
124 Ga0496113_0001781 3300048916 Bacteria 12223
125 nmdc:mga00v17_645_c1 3300050491 Bacteria 19293
126 nmdc:mga09592_124845_c1 3300050508 Bacteria 2212
127 nmdc:mga08y16_4116_c1 3300050511 Bacteria 15175
128 nmdc:mga0sz30_3412_c1 3300050516 Bacteria 2565
129 Ga0500646_0029417 3300053090 Bacteria 1504
130 Ga0500650_0077211 3300053098 Bacteria 1556
131 Ga0500556_0007168 3300053104 Bacteria 3186
132 Ga0500557_020601 3300053105 Bacteria 1878
133 Ga0500562_006209 3300053108 Bacteria 3015
134 Ga0500618_008450 3300053125 Bacteria 2869
135 Ga0500652_069847 3300053131 Bacteria 1454
136 Ga0500616_0000015 3300053153 Bacteria 633259
137 Ga0500622_0000182 3300053156 Bacteria 67645
138 Ga0500622_0000271 3300053156 Bacteria 53232
139 Ga0500622_0032074 3300053156 Bacteria 2755

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005439 Ga0070711_100218862 Ga0070711_1002188622 229
2 3300044765 Ga0466970_0013197 Ga0466970_0013197_1217_1942 233
3 3300044765 Ga0466970_0198663 Ga0466970_0198663_11_820 238
4 3300009093 Ga0105240_10549453 Ga0105240_105494531 239
5 3300025914 Ga0207671_10015681 Ga0207671_100156813 239
6 3300025942 Ga0207689_10335493 Ga0207689_103354932 239
7 3300042876 Ga0451577_0767013 Ga0451577_0767013_55_828 239
8 3300044712 Ga0453684_0588969 Ga0453684_0588969_120_896 239
9 3300006051 Ga0075364_10000542 Ga0075364_1000054217 248
10 3300006186 Ga0075369_10017684 Ga0075369_100176843 248
11 3300050491 nmdc:mga00v17_645_c1 nmdc:mga00v17_645_c1_16212_16985 248
12 3300050516 nmdc:mga0sz30_3412_c1 nmdc:mga0sz30_3412_c1_462_1271 248
13 3300053105 Ga0500557_020601 Ga0500557_020601_656_1498 260
14 iso_pu_bacteria 2687453341 2688394598 262
15 3300039062 Ga0400483_006213 Ga0400483_006213_62026_62862 264
16 3300044712 Ga0453684_0166669 Ga0453684_0166669_913_1827 264
17 3300031344 Ga0265316_10002843 Ga0265316_100028439 265
18 3300031712 Ga0265342_10128542 Ga0265342_101285423 265
19 3300042876 Ga0451577_0038408 Ga0451577_0038408_158_1015 265
20 3300042876 Ga0451577_0053103 Ga0451577_0053103_208_1068 265
21 3300044673 Ga0453683_0000092 Ga0453683_0000092_33998_34855 265
22 3300044673 Ga0453683_0003424 Ga0453683_0003424_10147_11004 265
23 3300044673 Ga0453683_0006444 Ga0453683_0006444_3537_4439 265
24 3300044673 Ga0453683_0326607 Ga0453683_0326607_69_929 265
25 3300044712 Ga0453684_0000337 Ga0453684_0000337_75606_76466 265
26 3300044712 Ga0453684_0016021 Ga0453684_0016021_6830_7687 265
27 3300044712 Ga0453684_0044420 Ga0453684_0044420_2482_3339 265
28 3300044712 Ga0453684_0101308 Ga0453684_0101308_11_868 265
29 3300044712 Ga0453684_0125147 Ga0453684_0125147_1621_2478 265
30 3300045051 Ga0451576_0000369 Ga0451576_0000369_96310_97167 265
31 3300045051 Ga0451576_0001334 Ga0451576_0001334_31511_32368 265
32 3300045051 Ga0451576_0018376 Ga0451576_0018376_3226_4086 265
33 3300045051 Ga0451576_0059733 Ga0451576_0059733_2894_3763 265
34 3300045051 Ga0451576_0702718 Ga0451576_0702718_30_887 265
35 3300046507 Ga0495606_0002264 Ga0495606_0002264_12424_13251 265
36 3300003320 rootH2_10023887 rootH2_1002388722 266
37 3300044656 Ga0466969_0027432 Ga0466969_0027432_1745_2641 266
38 3300044842 Ga0466957_0271577 Ga0466957_0271577_48_944 266
39 3300045049 Ga0466959_0000420 Ga0466959_0000420_13254_14150 266
40 3300045051 Ga0451576_0000002 Ga0451576_0000002_324469_325479 266
41 3300003322 rootL2_10083810 rootL2_100838101 267
42 3300003323 rootH1_10017530 rootH1_100175301 267
43 3300005563 Ga0068855_100054197 Ga0068855_1000541973 267
44 3300005563 Ga0068855_100188791 Ga0068855_1001887912 267
45 3300005577 Ga0068857_100097073 Ga0068857_1000970733 267
46 3300005577 Ga0068857_100163571 Ga0068857_1001635712 267
47 3300005614 Ga0068856_100129738 Ga0068856_1001297382 267
48 3300005616 Ga0068852_100051076 Ga0068852_1000510762 267
49 3300005843 Ga0068860_100013526 Ga0068860_1000135269 267
50 3300009093 Ga0105240_10758840 Ga0105240_107588401 267
51 3300009545 Ga0105237_10000826 Ga0105237_1000082633 267
52 3300009545 Ga0105237_10005300 Ga0105237_100053001 267
53 3300009551 Ga0105238_10319493 Ga0105238_103194933 267
54 3300010375 Ga0105239_10005215 Ga0105239_1000521518 267
55 3300013102 Ga0157371_10042799 Ga0157371_100427993 267
56 3300013296 Ga0157374_10276597 Ga0157374_102765972 267
57 3300013307 Ga0157372_10110466 Ga0157372_101104662 267
58 3300025913 Ga0207695_10410184 Ga0207695_104101842 267
59 3300025914 Ga0207671_10003697 Ga0207671_100036971 267
60 3300025949 Ga0207667_10118946 Ga0207667_101189462 267
61 3300025949 Ga0207667_10284997 Ga0207667_102849971 267
62 3300026067 Ga0207678_10312217 Ga0207678_103122172 267
63 3300026078 Ga0207702_10136938 Ga0207702_101369382 267
64 3300026116 Ga0207674_10117327 Ga0207674_101173272 267
65 3300026142 Ga0207698_10010165 Ga0207698_100101654 267
66 3300028381 Ga0268264_10112428 Ga0268264_101124283 267
67 3300028653 Ga0265323_10000379 Ga0265323_100003796 267
68 3300028794 Ga0307515_10000251 Ga0307515_1000025191 267
69 3300028800 Ga0265338_10010893 Ga0265338_1001089310 267
70 3300031344 Ga0265316_10000445 Ga0265316_1000044513 267
71 3300031507 Ga0307509_10276088 Ga0307509_102760882 267
72 3300031616 Ga0307508_10191804 Ga0307508_101918042 267
73 3300031727 Ga0316576_10216196 Ga0316576_102161962 267
74 3300031728 Ga0316578_10041194 Ga0316578_100411943 267
75 3300035398 Ga0316574_0343483 Ga0316574_0343483_44_895 267
76 3300037312 Ga0395899_0000111 Ga0395899_0000111_6402_7244 267
77 3300037418 Ga0395900_0054952 Ga0395900_0054952_319_1161 267
78 3300037471 Ga0395905_0000001 Ga0395905_0000001_1234386_1235270 267
79 3300044673 Ga0453683_0321718 Ga0453683_0321718_99_944 267
80 3300044712 Ga0453684_0001911 Ga0453684_0001911_29243_30088 267
81 3300044712 Ga0453684_0014964 Ga0453684_0014964_8825_9664 267
82 3300044712 Ga0453684_0103694 Ga0453684_0103694_1530_2372 267
83 3300053108 Ga0500562_006209 Ga0500562_006209_562_1416 267
84 3300053156 Ga0500622_0000182 Ga0500622_0000182_39254_40108 267
85 3300053156 Ga0500622_0000271 Ga0500622_0000271_24877_25731 267
86 3300001976 JGI24752J21851_1011405 JGI24752J21851_10114052 268
87 3300005290 Ga0065712_10110019 Ga0065712_101100192 268
88 3300005337 Ga0070682_100365134 Ga0070682_1003651342 268
89 3300005344 Ga0070661_100256456 Ga0070661_1002564562 268
90 3300005547 Ga0070693_100266229 Ga0070693_1002662292 268
91 3300005564 Ga0070664_100011944 Ga0070664_1000119448 268
92 3300005577 Ga0068857_100044257 Ga0068857_1000442575 268
93 3300005617 Ga0068859_100019575 Ga0068859_1000195758 268
94 3300005618 Ga0068864_100016835 Ga0068864_1000168352 268
95 3300005834 Ga0068851_10184437 Ga0068851_101844371 268
96 3300005841 Ga0068863_100002397 Ga0068863_10000239710 268
97 3300005842 Ga0068858_100267302 Ga0068858_1002673022 268
98 3300005843 Ga0068860_100373941 Ga0068860_1003739412 268
99 3300006237 Ga0097621_100147506 Ga0097621_1001475061 268
100 3300006358 Ga0068871_100074299 Ga0068871_1000742994 268
101 3300006844 Ga0075428_100133493 Ga0075428_1001334932 268
102 3300006880 Ga0075429_100094315 Ga0075429_1000943153 268
103 3300006931 Ga0097620_100019575 Ga0097620_1000195752 268
104 3300009094 Ga0111539_10004460 Ga0111539_100044607 268
105 3300014968 Ga0157379_10003770 Ga0157379_1000377010 268
106 3300025298 Ga0209050_1005223 Ga0209050_10052236 268
107 3300025304 Ga0209257_1027405 Ga0209257_10274053 268
108 3300025920 Ga0207649_10050825 Ga0207649_100508252 268
109 3300025931 Ga0207644_10116392 Ga0207644_101163923 268
110 3300025941 Ga0207711_10171788 Ga0207711_101717883 268
111 3300025945 Ga0207679_10323751 Ga0207679_103237512 268
112 3300025986 Ga0207658_10027210 Ga0207658_100272103 268
113 3300026088 Ga0207641_10058048 Ga0207641_100580482 268
114 3300026116 Ga0207674_10000660 Ga0207674_1000066029 268
115 3300028381 Ga0268264_10186606 Ga0268264_101866062 268
116 3300037471 Ga0395905_0001154 Ga0395905_0001154_9646_10491 268
117 3300038443 Ga0395901_0014652 Ga0395901_0014652_4542_5384 268
118 3300046460 Ga0495638_0000004 Ga0495638_0000004_658314_659156 268
119 3300048904 Ga0496101_0201456 Ga0496101_0201456_379_1212 268
120 3300048906 Ga0496103_0016959 Ga0496103_0016959_2946_3779 268
121 3300048907 Ga0496104_0266587 Ga0496104_0266587_611_1444 268
122 3300048908 Ga0496105_0202903 Ga0496105_0202903_698_1531 268
123 3300048909 Ga0496106_0028708 Ga0496106_0028708_1693_2526 268
124 3300048910 Ga0496107_0037266 Ga0496107_0037266_2296_3129 268
125 3300048911 Ga0496108_0011510 Ga0496108_0011510_2810_3643 268
126 3300048912 Ga0496109_0100728 Ga0496109_0100728_675_1508 268
127 3300048913 Ga0496110_0037453 Ga0496110_0037453_223_1056 268
128 3300048914 Ga0496111_0165272 Ga0496111_0165272_753_1586 268
129 3300048915 Ga0496112_0042329 Ga0496112_0042329_2450_3283 268
130 3300048916 Ga0496113_0001781 Ga0496113_0001781_2209_3042 268
131 3300050508 nmdc:mga09592_124845_c1 nmdc:mga09592_124845_c1_610_1455 268
132 3300050511 nmdc:mga08y16_4116_c1 nmdc:mga08y16_4116_c1_3533_4378 268
133 3300053090 Ga0500646_0029417 Ga0500646_0029417_151_996 268
134 3300053098 Ga0500650_0077211 Ga0500650_0077211_550_1392 268
135 3300053104 Ga0500556_0007168 Ga0500556_0007168_1315_2160 268
136 3300053125 Ga0500618_008450 Ga0500618_008450_536_1387 268
137 3300053131 Ga0500652_069847 Ga0500652_069847_393_1235 268
138 3300053153 Ga0500616_0000015 Ga0500616_0000015_171681_172523 268
139 3300053156 Ga0500622_0032074 Ga0500622_0032074_1531_2373 268

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02569

Pantoate_ligase

Pantoate-beta-alanine ligase

57

334

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mxt-assembly1.cif.gz_A crystal structure of pantoate-beta-alanine ligase from campylobacter jejuni 0.9467 1 268
3guz-assembly1.cif.gz_A structural and substrate-binding studies of pantothenate synthenate (ps)provide insights into homotropic inhibition by pantoate in ps's 0.9463 1 172
3mxt-assembly1.cif.gz_A crystal structure of pantoate-beta-alanine ligase from campylobacter jejuni 0.9433 1 268
3guz-assembly1.cif.gz_B structural and substrate-binding studies of pantothenate synthenate (ps)provide insights into homotropic inhibition by pantoate in ps's 0.9413 1 172
3q10-assembly2.cif.gz_D pantoate-beta-alanine ligase from yersinia pestis 0.9377 1 177
ID Description Score Start End Superfamily
3innA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9637 2 176 3.40.50.620
5hg0A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9547 3 176 3.40.50.620
3innA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9531 2 176 3.40.50.620
af_P40459_1_188_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9453 1 176 3.40.50.620
5hg0A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.944 3 176 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A535P7G3-F1-model_v4 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.9779 1 185 GO:0004592
GO:0005524
GO:0005829
GO:0015940
AF-A0A7W1UUN2-F1-model_v4 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.9773 11 211 GO:0004592
GO:0005524
GO:0005829
GO:0015940
AF-A0A658NLZ5-F1-model_v4 pantoate--beta-alanine ligase (AMP-forming) (EC 6.3.2.1) (Pantoate-activating enzyme) 0.9763 127 211 GO:0004592
GO:0005524
GO:0005829
GO:0015940
AF-A0A1E5JRG1-F1-model_v4 Pantoate-activating enzyme 0.976 29 187 GO:0004592
GO:0005524
GO:0005829
GO:0015940
AF-A0A4P8EHZ2-F1-model_v4 Pantothenate synthetase (PS) (EC 6.3.2.1) (Pantoate--beta-alanine ligase) (Pantoate-activating enzyme) 0.9755 2 268 GO:0004592
GO:0005524
GO:0005829
GO:0015940

Feature Viewer

pLDDT pTM Quality
88.75 0.88 High
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Predicted Structure (AlphaFold2)

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