F144282

General Info

Members Datasets Scaffolds Average Seq Length
130 108 120 550

Family's Representative Sequence

Representative Sequence 3300005336|Ga0070680_100074176|Ga0070680_1000741763
Length 587
Sequence MRIDRRKALALLGLGAAAPATQARARGPVSFQHGVASGDPLQDRVILWTRLTTRGSEPVSYRWRLDPLDRKGGGKHGGGVTGPDRDFTVKVDVVNLDPGRAYSFQFEAGGTTSPMGRTATLPEGPTKDAVLAVCTCALYPNGYFNAYGAIARLPRVDAVVHLGDYIYEYGGPGSYGMDSAVAGERPHDPPHECVSLADYRRRHAQYKTDPQLQAAHARAPWIVVWDDHETANDSWMGGAENHQPATEGDWNQRKAAAIKAYYEWMPIREPAGGGFSINRSFDFGDVASLFMLETRLTARDHQLYPDKEMPADPTPAELAAWRQRLADPARKMMSAGQEAWLGRALTASVKAGTPWQVIGNEVIMARLFTPPIHKYMSAEAYAAAKSELSHAGANRLARIEANAALGLPWGADMWDGYPADRQRFYGLVEKARANAIVVSGDSHAFWANELWDAETGGKRVAVEFGAPGITSPGPGESIAAVPLGDAFAKHNREVLFNNQTGKGFVLLTLTHAQATAELMAVSSIKDRAFTTRPIVTYHVTPGASGVSGLRVAQDTHSAHPGEGRDPDGRSRTRVLGARSRTGQPPAL

Samples

Sample ID Description Type Environment
1 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
2 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
3 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
4 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
5 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
6 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
7 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
8 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
9 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
39 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
40 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
61 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
62 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
63 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
70 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
71 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
72 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
73 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
74 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
75 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
76 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
77 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
78 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
79 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
80 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
81 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
82 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
83 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
84 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
85 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
90 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
91 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
92 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
97 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
98 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
99 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
100 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
101 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
102 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
103 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
104 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
105 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
106 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
107 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
108 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.31
Metatranscriptomes 0
Isolates 7.69

Biome Distribution

Category Percentage (%)
Aerial Root 0.77
Bulb 0
Endosphere 20.77
Nodule 0
Rhizoplane 1.54
Rhizosphere 63.85
Stem 0
Stem Tuber 0
Unclassified 13.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10001050 3300003791 Bacteria 21918
2 Ga0065165_1010230 3300005262 Bacteria 4086
3 Ga0070680_100074176 3300005336 Bacteria 2799
4 Ga0068868_100086352 3300005338 Bacteria 2522
5 Ga0070668_100000293 3300005347 Bacteria 32901
6 Ga0070673_100059389 3300005364 Bacteria 3027
7 Ga0070659_100091514 3300005366 Bacteria 2438
8 Ga0070681_10021011 3300005458 Bacteria 6540
9 Ga0070665_100000593 3300005548 Bacteria 50386
10 Ga0070664_100066699 3300005564 Bacteria 3074
11 Ga0068856_100093079 3300005614 Bacteria 2999
12 Ga0068864_100000067 3300005618 Bacteria 115834
13 Ga0068863_100000735 3300005841 Bacteria 32827
14 Ga0068863_100118452 3300005841 Bacteria 2524
15 Ga0068858_100000020 3300005842 Bacteria 175896
16 Ga0068860_100000382 3300005843 Bacteria 58081
17 Ga0070717_10016497 3300006028 Bacteria 5727
18 Ga0075368_10001453 3300006042 Bacteria 7577
19 Ga0075364_10000647 3300006051 Bacteria 17958
20 Ga0075364_10001277 3300006051 Bacteria 13547
21 Ga0068865_100006288 3300006881 Bacteria 7232
22 Ga0105250_10007503 3300009092 Bacteria 4681
23 Ga0105240_10000970 3300009093 Bacteria 51122
24 Ga0105240_10068418 3300009093 Bacteria 4397
25 Ga0105248_10015057 3300009177 Bacteria 8517
26 Ga0105248_10108779 3300009177 Bacteria 3126
27 Ga0105238_10010874 3300009551 Bacteria 9146
28 Ga0105238_10013458 3300009551 Bacteria 8258
29 Ga0105239_10263769 3300010375 Bacteria 1936
30 Ga0157373_10001998 3300013100 Bacteria 15466
31 Ga0157373_10002767 3300013100 Bacteria 13268
32 Ga0157375_10012057 3300013308 Bacteria 7656
33 Ga0163163_10051200 3300014325 Bacteria 4072
34 Ga0157379_10018770 3300014968 Bacteria 6097
35 Ga0209026_1000803 3300025250 Bacteria 17062
36 Ga0209758_1000654 3300025297 Bacteria 52302
37 Ga0209050_1000173 3300025298 Bacteria 149800
38 Ga0209050_1017554 3300025298 Bacteria 2842
39 Ga0209256_1000888 3300025299 Bacteria 36832
40 Ga0209257_1000196 3300025304 Bacteria 149656
41 Ga0209257_1000750 3300025304 Bacteria 49020
42 Ga0207705_10093729 3300025909 Bacteria 2201
43 Ga0207707_10013146 3300025912 Bacteria 7213
44 Ga0207695_10000572 3300025913 Bacteria 75360
45 Ga0207695_10033468 3300025913 Bacteria 5604
46 Ga0207695_10039728 3300025913 Bacteria 5054
47 Ga0207694_10160903 3300025924 Bacteria 1813
48 Ga0207690_10016329 3300025932 Bacteria 4514
49 Ga0207704_10039462 3300025938 Bacteria 2749
50 Ga0207711_10006868 3300025941 Bacteria 9557
51 Ga0207711_10087493 3300025941 Bacteria 2733
52 Ga0207679_10046548 3300025945 Bacteria 3145
53 Ga0207651_10071230 3300025960 Bacteria 2463
54 Ga0207668_10001930 3300025972 Bacteria 12135
55 Ga0207658_10126743 3300025986 Bacteria 2045
56 Ga0207703_10000082 3300026035 Bacteria 110579
57 Ga0207641_10000007 3300026088 Bacteria 441443
58 Ga0207676_10000241 3300026095 Bacteria 47707
59 Ga0268266_10000003 3300028379 Bacteria 1701703
60 Ga0268266_10060407 3300028379 Bacteria 3268
61 Ga0268265_10004912 3300028380 Bacteria 9199
62 Ga0268264_10000008 3300028381 Bacteria 773387
63 Ga0307517_10120443 3300028786 Bacteria 1943
64 Ga0307515_10067857 3300028794 Bacteria 4911
65 Ga0307513_10018307 3300031456 Bacteria 8375
66 Ga0307513_10062892 3300031456 Bacteria 3920
67 Ga0307413_10022263 3300031824 Bacteria 3412
68 Ga0395899_0000347 3300037312 Bacteria 57058
69 Ga0395900_0000008 3300037418 Bacteria 480459
70 Ga0395898_0064073 3300037466 Bacteria 3565
71 Ga0395905_0001727 3300037471 Bacteria 25583
72 Ga0395905_0057128 3300037471 Bacteria 3650
73 Ga0395901_0000008 3300038443 Bacteria 495962
74 Ga0451833_0980981 3300041491 Bacteria 18627
75 Ga0495596_0000046 3300046500 Bacteria 89403
76 Ga0495583_0023026 3300046506 Bacteria 3161
77 Ga0495606_0024435 3300046507 Bacteria 4354
78 Ga0495610_0000550 3300046512 Bacteria 37563
79 Ga0495610_0004563 3300046512 Bacteria 10183
80 Ga0495620_0022340 3300046515 Bacteria 3048
81 Ga0495628_0088868 3300046516 Bacteria 2394
82 Ga0495643_0000004 3300046522 Bacteria 519944
83 Ga0495643_0010858 3300046522 Bacteria 5581
84 Ga0495648_0000066 3300046524 Bacteria 140767
85 Ga0495642_0010770 3300046528 Bacteria 3503
86 Ga0495609_0004356 3300046538 Bacteria 7776
87 Ga0495597_0008222 3300046542 Bacteria 5243
88 Ga0495668_0001894 3300046616 Bacteria 18724
89 Ga0495668_0005630 3300046616 Bacteria 8416
90 Ga0495611_0003099 3300046648 Bacteria 7385
91 Ga0495625_0048910 3300046660 Bacteria 3041
92 Ga0495669_0011834 3300046684 Bacteria 3710
93 Ga0495669_0016448 3300046684 Bacteria 3168
94 Ga0495673_0001872 3300047469 Bacteria 15797
95 Ga0495686_0004444 3300047472 Bacteria 11546
96 Ga0495593_0028418 3300047673 Bacteria 3071
97 Ga0496115_0000126 3300048918 Bacteria 69044
98 Ga0496115_0008676 3300048918 Bacteria 7531
99 Ga0496117_0049553 3300048920 Bacteria 2986
100 Ga0496118_0023311 3300048921 Bacteria 5380
101 Ga0496119_0014696 3300048922 Bacteria 6099
102 Ga0496121_0000035 3300048924 Bacteria 374316
103 Ga0496123_0037558 3300048926 Bacteria 3418
104 Ga0501077_0016744 3300049593 Bacteria 4622
105 nmdc:mga00v17_2010_c1 3300050491 Bacteria 10477
106 nmdc:mga00v17_491_c1 3300050491 Bacteria 22189
107 nmdc:mga06z11_9752_c1 3300050494 Bacteria 4058
108 nmdc:mga07m45_3490_c1 3300050496 Bacteria 7581
109 Ga0500635_0000270 3300053080 Bacteria 20001
110 Ga0500644_0000425 3300053088 Bacteria 19776
111 Ga0500644_0013395 3300053088 Bacteria 2290
112 Ga0500555_002722 3300053103 Bacteria 5079
113 Ga0500555_005567 3300053103 Bacteria 3574
114 Ga0500562_001239 3300053108 Bacteria 6287
115 Ga0500607_086758 3300053121 Bacteria 1584
116 Ga0500614_005128 3300053123 Bacteria 2750
117 Ga0500638_009113 3300053162 Bacteria 4273
118 Ga0500636_0023444 3300053177 Bacteria 3649
119 Ga0500637_0017203 3300053178 Bacteria 3867
120 Ga0500645_002812 3300053730 Bacteria 7501

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053121 Ga0500607_086758 Ga0500607_086758_135_1574 466
2 3300053088 Ga0500644_0013395 Ga0500644_0013395_647_2260 500
3 3300050491 nmdc:mga00v17_2010_c1 nmdc:mga00v17_2010_c1_8338_9981 501
4 iso_pu_bacteria 2643221681 2644458066 501
5 3300049593 Ga0501077_0016744 Ga0501077_0016744_1200_2765 502
6 3300006051 Ga0075364_10001277 Ga0075364_100012774 503
7 3300053103 Ga0500555_005567 Ga0500555_005567_1177_2796 504
8 3300041491 Ga0451833_0980981 Ga0451833_0980981_5612_7243 508
9 3300047673 Ga0495593_0028418 Ga0495593_0028418_1502_3046 508
10 iso_pu_bacteria 2866552031 2866552292 508
11 iso_pu_bacteria 2984592036 2984594133 508
12 iso_pu_bacteria 2643221697 2644536885 509
13 3300048926 Ga0496123_0037558 Ga0496123_0037558_96_1760 514
14 3300046684 Ga0495669_0011834 Ga0495669_0011834_1232_2803 515
15 3300031456 Ga0307513_10062892 Ga0307513_100628923 518
16 3300048921 Ga0496118_0023311 Ga0496118_0023311_3737_5332 523
17 3300053123 Ga0500614_005128 Ga0500614_005128_13_1611 523
18 iso_pu_bacteria 2884960567 2884960585 523
19 3300005564 Ga0070664_100066699 Ga0070664_1000666992 524
20 3300009093 Ga0105240_10000970 Ga0105240_100009708 524
21 3300025913 Ga0207695_10000572 Ga0207695_1000057272 524
22 3300025945 Ga0207679_10046548 Ga0207679_100465482 524
23 3300013100 Ga0157373_10002767 Ga0157373_100027678 525
24 3300037471 Ga0395905_0001727 Ga0395905_0001727_8453_10111 525
25 3300013100 Ga0157373_10001998 Ga0157373_1000199811 526
26 3300005366 Ga0070659_100091514 Ga0070659_1000915142 527
27 3300025932 Ga0207690_10016329 Ga0207690_100163292 527
28 3300010375 Ga0105239_10263769 Ga0105239_102637691 528
29 3300009093 Ga0105240_10068418 Ga0105240_100684183 529
30 3300025913 Ga0207695_10039728 Ga0207695_100397284 529
31 3300009551 Ga0105238_10013458 Ga0105238_100134584 531
32 3300025924 Ga0207694_10160903 Ga0207694_101609032 531
33 3300006881 Ga0068865_100006288 Ga0068865_1000062882 532
34 3300025938 Ga0207704_10039462 Ga0207704_100394622 532
35 3300048922 Ga0496119_0014696 Ga0496119_0014696_427_2094 532
36 3300053108 Ga0500562_001239 Ga0500562_001239_2645_4312 534
37 3300025941 Ga0207711_10006868 Ga0207711_100068685 535
38 3300053080 Ga0500635_0000270 Ga0500635_0000270_12598_14259 536
39 3300053162 Ga0500638_009113 Ga0500638_009113_2350_4011 536
40 3300053177 Ga0500636_0023444 Ga0500636_0023444_478_2139 536
41 3300053178 Ga0500637_0017203 Ga0500637_0017203_530_2191 536
42 3300046684 Ga0495669_0016448 Ga0495669_0016448_386_2029 538
43 3300005548 Ga0070665_100000593 Ga0070665_1000005938 539
44 3300025909 Ga0207705_10093729 Ga0207705_100937292 539
45 3300028379 Ga0268266_10000003 Ga0268266_10000003831 539
46 3300048918 Ga0496115_0008676 Ga0496115_0008676_2383_4044 539
47 3300046648 Ga0495611_0003099 Ga0495611_0003099_4907_6574 541
48 3300006042 Ga0075368_10001453 Ga0075368_100014533 542
49 3300006051 Ga0075364_10000647 Ga0075364_1000064712 542
50 3300028786 Ga0307517_10120443 Ga0307517_101204431 542
51 3300046528 Ga0495642_0010770 Ga0495642_0010770_1702_3387 542
52 3300050491 nmdc:mga00v17_491_c1 nmdc:mga00v17_491_c1_11350_13002 542
53 3300050494 nmdc:mga06z11_9752_c1 nmdc:mga06z11_9752_c1_915_2567 542
54 3300050496 nmdc:mga07m45_3490_c1 nmdc:mga07m45_3490_c1_3958_5610 542
55 3300005618 Ga0068864_100000067 Ga0068864_10000006750 543
56 3300005841 Ga0068863_100000735 Ga0068863_10000073529 543
57 3300005842 Ga0068858_100000020 Ga0068858_10000002099 543
58 3300009092 Ga0105250_10007503 Ga0105250_100075035 543
59 3300009177 Ga0105248_10108779 Ga0105248_101087792 543
60 3300014325 Ga0163163_10051200 Ga0163163_100512004 543
61 3300014968 Ga0157379_10018770 Ga0157379_100187705 543
62 3300025941 Ga0207711_10087493 Ga0207711_100874932 543
63 3300026035 Ga0207703_10000082 Ga0207703_1000008239 543
64 3300026088 Ga0207641_10000007 Ga0207641_1000000764 543
65 3300026095 Ga0207676_10000241 Ga0207676_100002414 543
66 3300046500 Ga0495596_0000046 Ga0495596_0000046_66259_67989 543
67 3300046506 Ga0495583_0023026 Ga0495583_0023026_714_2444 543
68 3300046507 Ga0495606_0024435 Ga0495606_0024435_334_2061 543
69 3300046512 Ga0495610_0000550 Ga0495610_0000550_3928_5655 543
70 3300046515 Ga0495620_0022340 Ga0495620_0022340_1262_2923 543
71 3300046522 Ga0495643_0000004 Ga0495643_0000004_109718_111445 543
72 3300046522 Ga0495643_0010858 Ga0495643_0010858_147_1808 543
73 3300046538 Ga0495609_0004356 Ga0495609_0004356_3538_5268 543
74 3300046542 Ga0495597_0008222 Ga0495597_0008222_3301_4962 543
75 3300046616 Ga0495668_0005630 Ga0495668_0005630_3016_4677 543
76 3300048920 Ga0496117_0049553 Ga0496117_0049553_497_2164 543
77 3300048924 Ga0496121_0000035 Ga0496121_0000035_53343_55010 543
78 3300053103 Ga0500555_002722 Ga0500555_002722_1903_3558 543
79 iso_pu_bacteria 2510917021 2511126027 543
80 iso_pu_bacteria 8054302542 8054306785 543
81 3300006028 Ga0070717_10016497 Ga0070717_100164974 544
82 3300025299 Ga0209256_1000888 Ga0209256_100088829 544
83 3300031456 Ga0307513_10018307 Ga0307513_100183079 544
84 3300046660 Ga0495625_0048910 Ga0495625_0048910_629_2290 544
85 3300048918 Ga0496115_0000126 Ga0496115_0000126_53823_55511 544
86 3300009177 Ga0105248_10015057 Ga0105248_100150574 545
87 iso_pu_bacteria 2643221614 2644087057 545
88 iso_pu_bacteria 2643221661 2644342011 545
89 iso_pu_bacteria 2643221666 2644368298 545
90 3300005336 Ga0070680_100074176 Ga0070680_1000741763 546
91 3300005458 Ga0070681_10021011 Ga0070681_100210114 546
92 3300005614 Ga0068856_100093079 Ga0068856_1000930793 546
93 3300025912 Ga0207707_10013146 Ga0207707_100131466 546
94 3300025913 Ga0207695_10033468 Ga0207695_100334684 546
95 3300046516 Ga0495628_0088868 Ga0495628_0088868_63_1739 546
96 3300005347 Ga0070668_100000293 Ga0070668_1000002934 547
97 3300005843 Ga0068860_100000382 Ga0068860_10000038259 547
98 3300025972 Ga0207668_10001930 Ga0207668_100019304 547
99 3300028379 Ga0268266_10060407 Ga0268266_100604073 547
100 3300028380 Ga0268265_10004912 Ga0268265_100049129 547
101 3300028381 Ga0268264_10000008 Ga0268264_10000008316 547
102 3300037312 Ga0395899_0000347 Ga0395899_0000347_30691_32397 547
103 3300037418 Ga0395900_0000008 Ga0395900_0000008_127253_128959 547
104 3300037466 Ga0395898_0064073 Ga0395898_0064073_1424_3130 547
105 3300038443 Ga0395901_0000008 Ga0395901_0000008_351507_353213 547
106 3300025304 Ga0209257_1000750 Ga0209257_100075041 548
107 3300031824 Ga0307413_10022263 Ga0307413_100222632 549
108 3300047472 Ga0495686_0004444 Ga0495686_0004444_4722_6371 549
109 3300053730 Ga0500645_002812 Ga0500645_002812_2847_4496 549
110 3300009551 Ga0105238_10010874 Ga0105238_100108746 550
111 3300025298 Ga0209050_1017554 Ga0209050_10175541 551
112 3300028794 Ga0307515_10067857 Ga0307515_100678571 551
113 3300046512 Ga0495610_0004563 Ga0495610_0004563_1084_2793 551
114 3300046524 Ga0495648_0000066 Ga0495648_0000066_55322_57031 551
115 3300046616 Ga0495668_0001894 Ga0495668_0001894_14894_16603 551
116 3300047469 Ga0495673_0001872 Ga0495673_0001872_10486_12195 551
117 3300053088 Ga0500644_0000425 Ga0500644_0000425_18026_19735 551
118 3300003791 Ga0055530_10001050 Ga0055530_1000105019 552
119 3300005262 Ga0065165_1010230 Ga0065165_10102304 552
120 3300005338 Ga0068868_100086352 Ga0068868_1000863521 552
121 3300005364 Ga0070673_100059389 Ga0070673_1000593892 552
122 3300005841 Ga0068863_100118452 Ga0068863_1001184522 552
123 3300013308 Ga0157375_10012057 Ga0157375_100120573 552
124 3300025250 Ga0209026_1000803 Ga0209026_10008034 552
125 3300025297 Ga0209758_1000654 Ga0209758_10006548 552
126 3300025298 Ga0209050_1000173 Ga0209050_1000173125 552
127 3300025304 Ga0209257_1000196 Ga0209257_1000196125 552
128 3300025960 Ga0207651_10071230 Ga0207651_100712302 552
129 3300025986 Ga0207658_10126743 Ga0207658_101267432 552
130 3300037471 Ga0395905_0057128 Ga0395905_0057128_1890_3548 552

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09423

PhoD

PhoD-like phosphatase

131

518

0.93

PF16655

PhoD_N

PhoD-like phosphatase, N-terminal domain

33

120

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2yeq-assembly1.cif.gz_A structure of phod 0.8778 32 552
2yeq-assembly1.cif.gz_A structure of phod 0.8064 32 552
7cg1-assembly1.cif.gz_A solution structure of the sensor domain of the anti-sigma factor rsgi4 in pseudobacteroides cellulosolvens 0.7854 36 125
4n68-assembly1.cif.gz_A crystal structure of an internal fn3 domain from human contactin-5 [psi-nysgrc-005804] 0.7808 36 126
7cg8-assembly1.cif.gz_C structure of the sensor domain (short construct) of the anti-sigma factor rsgi4 in pseudobacteroides cellulosolvens 0.7689 29 125
ID Description Score Start End Superfamily
2yeqB01 Mainly Beta;Sandwich;Immunoglobulin-like;Purple acid phosphatase-like, N-terminal 0.91 32 126 2.60.40.380
2yeqA02 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Alkaline phosphatase D (PhoD) 0.8705 125 552 3.60.21.70
4bq9B01 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8458 35 125 2.60.40.10
af_X1WHE3_1930_2017_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8157 35 120 2.60.40.10
af_O73878_441_529_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.7987 35 125 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A3B9GZ17-F1-model_v4 Alkaline phosphatase 0.965 427 552
AF-A0A519KZV6-F1-model_v4 Alkaline phosphatase 0.959 461 552
AF-A0A258KPI3-F1-model_v4 PhoD-like phosphatase metallophosphatase domain-containing protein 0.9569 166 552
AF-A0A519K6Z5-F1-model_v4 Alkaline phosphatase 0.9562 284 552
AF-A0A2W4URH2-F1-model_v4 Alkaline phosphatase 0.9556 96 290

Feature Viewer

pLDDT pTM Quality
90.94 0.9 High
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Predicted Structure (AlphaFold2)

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