F128394

General Info

Members Datasets Scaffolds Average Seq Length
125 110 121 470

Family's Representative Sequence

Representative Sequence 3300053125|Ga0500618_004434|Ga0500618_004434_2678_4264
Length 528
Sequence MKHDVLIVFASEFMIEFYLNNQPIRTTEPPASALLDFVRYHEHLKGTKIGCREGDCGACTVLVGELNADGQTVSYQSMTSCLTPLGNAHGKHIVTVEGINAAGSQLTPVQQAIVDEGGSQCGFCTVGFVMSLTGHSLSTQQATEKSTIAAIDGNICRCTGYKSLERAAARLTAELADRPAGNALAWLSEKQFVPGYFAEIPAKLAKLRPVEAGAAEVSPAAQVASAAVHANGSSTISTSPNGHAQSQNDHGQHSPIYPFTHSLIGGGTDLLVQRLEELREQPAVRLVFDQPGRRGIHQEATGRVVLGAATTASQLLESELMRGLLPNLPQYLKLVSSTPIRNMGTVAGTFINGSPIGDLTIIFLALGASITLLDAAGATRELALPDLYLGYKKLAKTADEQVIEISFPAPLAGDFFHFEKVSKRTHLDIASVNSAAWLRVESGVIQAARVSAGGVGPVPLLLARTSEFLRGRELTAETVAAANAVMQEEISPISDVRGTSDYKRLLLRQLLWAHFLQFAPGLAVDELI

Samples

Sample ID Description Type Environment
1 2738541278 Niastella sp. CF465 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
4 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
44 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
45 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
46 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
70 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
71 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
72 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
73 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
94 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
102 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
103 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
104 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
105 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
106 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
107 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
108 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
109 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
110 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.8
Metatranscriptomes 0
Isolates 3.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12
Nodule 0
Rhizoplane 0
Rhizosphere 74.4
Stem 0
Stem Tuber 0
Unclassified 13.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10162352 3300003320 Bacteria 2241
2 rootL2_10210079 3300003322 Unclassified 2544
3 Ga0055531_10000102 3300003794 Bacteria 92703
4 Ga0070683_100068784 3300005329 Bacteria 3300
5 Ga0070666_10000143 3300005335 Bacteria 48999
6 Ga0070680_100014385 3300005336 Bacteria 6184
7 Ga0070661_100150720 3300005344 Bacteria 1758
8 Ga0070675_100000007 3300005354 Bacteria 263394
9 Ga0070674_100183554 3300005356 Bacteria 1604
10 Ga0070659_100000092 3300005366 Bacteria 67270
11 Ga0070667_100032392 3300005367 Bacteria 4359
12 Ga0070700_100000024 3300005441 Bacteria 128154
13 Ga0068853_100001641 3300005539 Bacteria 16348
14 Ga0068855_100021377 3300005563 Bacteria 7759
15 Ga0070664_100037497 3300005564 Bacteria 4076
16 Ga0068856_100190861 3300005614 Bacteria 2062
17 Ga0068852_100094908 3300005616 Bacteria 2677
18 Ga0068859_100000099 3300005617 Bacteria 80240
19 Ga0068864_100084018 3300005618 Bacteria 2797
20 Ga0068860_100001298 3300005843 Bacteria 27144
21 Ga0068862_100174510 3300005844 Bacteria 1926
22 Ga0097621_100003043 3300006237 Bacteria 11509
23 Ga0068871_100006159 3300006358 Bacteria 8455
24 Ga0068871_100054386 3300006358 Unclassified 3248
25 Ga0097620_100000099 3300006931 Bacteria 80240
26 Ga0105240_10000160 3300009093 Bacteria 137390
27 Ga0111539_10000013 3300009094 Bacteria 309567
28 Ga0105243_10033624 3300009148 Unclassified 3966
29 Ga0105241_10000397 3300009174 Bacteria 32881
30 Ga0105237_10020663 3300009545 Bacteria 6781
31 Ga0105237_10027732 3300009545 Bacteria 5774
32 Ga0105237_10028273 3300009545 Bacteria 5713
33 Ga0105237_10039489 3300009545 Bacteria 4765
34 Ga0105249_10014586 3300009553 Bacteria 6947
35 Ga0105239_10000140 3300010375 Bacteria 101896
36 Ga0105239_10026849 3300010375 Bacteria 6337
37 Ga0105239_10133078 3300010375 Bacteria 2767
38 Ga0105246_10017752 3300011119 Bacteria 4526
39 Ga0157373_10000087 3300013100 Bacteria 80308
40 Ga0157374_10000004 3300013296 Bacteria 759774
41 Ga0157374_10175482 3300013296 Bacteria 2092
42 Ga0157378_10057409 3300013297 Bacteria 3469
43 Ga0157378_10122451 3300013297 Bacteria 2399
44 Ga0163162_10001194 3300013306 Bacteria 24252
45 Ga0157372_10001345 3300013307 Bacteria 26589
46 Ga0157376_10007685 3300014969 Bacteria 7722
47 Ga0157376_10175586 3300014969 Bacteria 1954
48 Ga0182005_1000023 3300015265 Bacteria 246328
49 Ga0209646_1003235 3300025246 Bacteria 3268
50 Ga0209026_1000484 3300025250 Bacteria 29488
51 Ga0207426_1014457 3300025302 Bacteria 2890
52 Ga0209257_1000004 3300025304 Bacteria 1678347
53 Ga0207680_10000096 3300025903 Bacteria 40670
54 Ga0207654_10000240 3300025911 Bacteria 33102
55 Ga0207695_10000027 3300025913 Bacteria 612456
56 Ga0207671_10001586 3300025914 Bacteria 25838
57 Ga0207659_10000113 3300025926 Bacteria 47735
58 Ga0207644_10028480 3300025931 Unclassified 3868
59 Ga0207690_10004582 3300025932 Bacteria 8168
60 Ga0207686_10089014 3300025934 Bacteria 2034
61 Ga0207689_10001706 3300025942 Bacteria 20803
62 Ga0207661_10089247 3300025944 Bacteria 2564
63 Ga0207703_10003309 3300026035 Bacteria 13527
64 Ga0207708_10000068 3300026075 Bacteria 83320
65 Ga0207702_10010137 3300026078 Bacteria 7890
66 Ga0207641_10000998 3300026088 Bacteria 28957
67 Ga0207648_10010651 3300026089 Bacteria 8692
68 Ga0207428_10000017 3300027907 Bacteria 309575
69 Ga0268264_10001066 3300028381 Bacteria 27233
70 Ga0307515_10000024 3300028794 Bacteria 393119
71 Ga0307513_10030078 3300031456 Bacteria 6175
72 Ga0307509_10006991 3300031507 Bacteria 14957
73 Ga0307509_10056827 3300031507 Bacteria 4152
74 Ga0307509_10168974 3300031507 Bacteria 2070
75 Ga0307508_10001325 3300031616 Bacteria 28026
76 Ga0400487_45061 3300039110 Bacteria 21267
77 Ga0451853_3935750 3300041512 Bacteria 1980
78 Ga0439457_005322 3300042014 Bacteria 3253
79 Ga0466969_0000102 3300044656 Bacteria 45137
80 Ga0466972_0000039 3300044658 Bacteria 135618
81 Ga0466966_0000018 3300044684 Bacteria 122605
82 Ga0453684_0007148 3300044712 Bacteria 20775
83 Ga0466957_0000530 3300044842 Bacteria 19237
84 Ga0466959_0000002 3300045049 Bacteria 362671
85 Ga0495668_0002991 3300046616 Bacteria 13196
86 Ga0495625_0129691 3300046660 Bacteria 1709
87 Ga0495686_0008554 3300047472 Bacteria 7498
88 Ga0496121_0000010 3300048924 Bacteria 793488
89 Ga0501031_0017843 3300049568 Bacteria 4615
90 Ga0501032_0006525 3300049569 Bacteria 8570
91 Ga0501033_0000610 3300049570 Bacteria 33102
92 Ga0501034_0000172 3300049571 Bacteria 120544
93 Ga0501036_0003876 3300049572 Bacteria 11998
94 Ga0501037_0006523 3300049573 Bacteria 8538
95 Ga0501038_0028151 3300049574 Bacteria 4992
96 Ga0501038_0061924 3300049574 Bacteria 3199
97 Ga0501039_0000906 3300049575 Bacteria 21601
98 Ga0501043_0004436 3300049579 Bacteria 11402
99 Ga0501047_0026042 3300049581 Bacteria 5624
100 Ga0501048_0053952 3300049582 Bacteria 2856
101 Ga0501073_0002940 3300049589 Bacteria 12766
102 Ga0501257_015334 3300049686 Unclassified 1769
103 Ga0501080_0230214 3300049742 Bacteria 1694
104 Ga0501241_000440 3300049758 Bacteria 9077
105 Ga0501035_0002297 3300049822 Bacteria 18882
106 Ga0501044_0000801 3300049823 Bacteria 37915
107 Ga0501044_0001010 3300049823 Bacteria 33787
108 Ga0501045_0001691 3300049824 Bacteria 14854
109 nmdc:mga08y16_19_c1 3300050511 Bacteria 309575
110 Ga0500578_0000034 3300053086 Bacteria 136582
111 Ga0500578_0097765 3300053086 Bacteria 1860
112 Ga0500583_0000198 3300053092 Bacteria 22983
113 Ga0500583_0000937 3300053092 Bacteria 8305
114 Ga0500641_0007019 3300053096 Unclassified 4012
115 Ga0500650_0049927 3300053098 Bacteria 1942
116 Ga0500618_004434 3300053125 Bacteria 4495
117 Ga0500568_0000298 3300053139 Bacteria 40260
118 Ga0500573_0105081 3300053140 Bacteria 1586
119 Ga0500639_055222 3300053163 Bacteria 2060
120 Ga0500636_0094951 3300053177 Bacteria 1703
121 Ga0500611_000003 3300053727 Bacteria 333431

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300015265 Ga0182005_1000023 Ga0182005_1000023224 390
2 3300053086 Ga0500578_0097765 Ga0500578_0097765_395_1621 408
3 3300028794 Ga0307515_10000024 Ga0307515_10000024249 440
4 3300005539 Ga0068853_100001641 Ga0068853_10000164111 441
5 3300025302 Ga0207426_1014457 Ga0207426_10144572 444
6 3300048924 Ga0496121_0000010 Ga0496121_0000010_657736_659088 444
7 3300053727 Ga0500611_000003 Ga0500611_000003_50763_52211 444
8 3300003794 Ga0055531_10000102 Ga0055531_100001028 446
9 3300009094 Ga0111539_10000013 Ga0111539_1000001368 446
10 3300013307 Ga0157372_10001345 Ga0157372_1000134524 446
11 3300025250 Ga0209026_1000484 Ga0209026_100048431 446
12 3300025304 Ga0209257_1000004 Ga0209257_10000041341 446
13 3300027907 Ga0207428_10000017 Ga0207428_10000017203 446
14 3300044684 Ga0466966_0000018 Ga0466966_0000018_115818_117197 446
15 3300046616 Ga0495668_0002991 Ga0495668_0002991_4120_5547 446
16 3300049758 Ga0501241_000440 Ga0501241_000440_3197_4558 446
17 3300050511 nmdc:mga08y16_19_c1 nmdc:mga08y16_19_c1_233594_234991 446
18 3300005356 Ga0070674_100183554 Ga0070674_1001835541 448
19 3300005336 Ga0070680_100014385 Ga0070680_1000143853 450
20 3300005354 Ga0070675_100000007 Ga0070675_100000007149 450
21 3300005441 Ga0070700_100000024 Ga0070700_10000002417 450
22 3300025926 Ga0207659_10000113 Ga0207659_1000011335 450
23 3300026075 Ga0207708_10000068 Ga0207708_100000686 450
24 3300031507 Ga0307509_10006991 Ga0307509_100069914 450
25 3300031507 Ga0307509_10056827 Ga0307509_100568271 450
26 3300049589 Ga0501073_0002940 Ga0501073_0002940_43_1440 450
27 3300049742 Ga0501080_0230214 Ga0501080_0230214_218_1615 450
28 3300009093 Ga0105240_10000160 Ga0105240_1000016075 453
29 3300025913 Ga0207695_10000027 Ga0207695_10000027156 453
30 3300053096 Ga0500641_0007019 Ga0500641_0007019_1626_3113 453
31 iso_pu_bacteria 2821136567 2821140275 458
32 iso_pu_bacteria 2904467357 2904472400 458
33 3300010375 Ga0105239_10026849 Ga0105239_100268494 459
34 3300044656 Ga0466969_0000102 Ga0466969_0000102_41279_42658 459
35 3300045049 Ga0466959_0000002 Ga0466959_0000002_176352_177731 459
36 3300014969 Ga0157376_10175586 Ga0157376_101755862 460
37 3300049569 Ga0501032_0006525 Ga0501032_0006525_4291_5769 460
38 3300005614 Ga0068856_100190861 Ga0068856_1001908612 461
39 3300009545 Ga0105237_10027732 Ga0105237_100277323 461
40 3300026078 Ga0207702_10010137 Ga0207702_100101372 461
41 3300044712 Ga0453684_0007148 Ga0453684_0007148_15836_17239 461
42 3300039110 Ga0400487_45061 Ga0400487_45061_4190_5614 462
43 3300047472 Ga0495686_0008554 Ga0495686_0008554_5982_7412 462
44 3300049568 Ga0501031_0017843 Ga0501031_0017843_853_2283 462
45 3300049570 Ga0501033_0000610 Ga0501033_0000610_29068_30498 462
46 3300049571 Ga0501034_0000172 Ga0501034_0000172_61741_63171 462
47 3300049572 Ga0501036_0003876 Ga0501036_0003876_7186_8616 462
48 3300049573 Ga0501037_0006523 Ga0501037_0006523_1477_2907 462
49 3300049574 Ga0501038_0028151 Ga0501038_0028151_2416_3846 462
50 3300049575 Ga0501039_0000906 Ga0501039_0000906_20054_21484 462
51 3300049579 Ga0501043_0004436 Ga0501043_0004436_1424_2854 462
52 3300049582 Ga0501048_0053952 Ga0501048_0053952_880_2310 462
53 3300049822 Ga0501035_0002297 Ga0501035_0002297_2345_3775 462
54 3300049823 Ga0501044_0001010 Ga0501044_0001010_30114_31544 462
55 3300049824 Ga0501045_0001691 Ga0501045_0001691_10505_11935 462
56 iso_pu_bacteria 2738541278 2738727176 462
57 iso_pu_bacteria 2818991442 2819572354 462
58 3300005329 Ga0070683_100068784 Ga0070683_1000687845 463
59 3300005344 Ga0070661_100150720 Ga0070661_1001507201 463
60 3300005366 Ga0070659_100000092 Ga0070659_1000000925 463
61 3300005563 Ga0068855_100021377 Ga0068855_1000213774 463
62 3300005564 Ga0070664_100037497 Ga0070664_1000374971 463
63 3300006358 Ga0068871_100054386 Ga0068871_1000543862 463
64 3300009148 Ga0105243_10033624 Ga0105243_100336242 463
65 3300009545 Ga0105237_10020663 Ga0105237_100206636 463
66 3300009545 Ga0105237_10028273 Ga0105237_100282732 463
67 3300010375 Ga0105239_10000140 Ga0105239_1000014063 463
68 3300025932 Ga0207690_10004582 Ga0207690_100045824 463
69 3300049823 Ga0501044_0000801 Ga0501044_0000801_2260_3702 463
70 3300053086 Ga0500578_0000034 Ga0500578_0000034_107340_108872 463
71 3300003320 rootH2_10162352 rootH2_101623522 464
72 3300003322 rootL2_10210079 rootL2_102100793 464
73 3300005335 Ga0070666_10000143 Ga0070666_1000014342 464
74 3300005367 Ga0070667_100032392 Ga0070667_1000323922 464
75 3300005616 Ga0068852_100094908 Ga0068852_1000949082 464
76 3300005617 Ga0068859_100000099 Ga0068859_10000009941 464
77 3300005618 Ga0068864_100084018 Ga0068864_1000840182 464
78 3300005843 Ga0068860_100001298 Ga0068860_10000129819 464
79 3300005844 Ga0068862_100174510 Ga0068862_1001745102 464
80 3300006237 Ga0097621_100003043 Ga0097621_1000030433 464
81 3300006358 Ga0068871_100006159 Ga0068871_1000061595 464
82 3300006931 Ga0097620_100000099 Ga0097620_10000009941 464
83 3300009174 Ga0105241_10000397 Ga0105241_1000039719 464
84 3300009545 Ga0105237_10039489 Ga0105237_100394893 464
85 3300009553 Ga0105249_10014586 Ga0105249_100145863 464
86 3300010375 Ga0105239_10133078 Ga0105239_101330782 464
87 3300011119 Ga0105246_10017752 Ga0105246_100177523 464
88 3300013100 Ga0157373_10000087 Ga0157373_1000008736 464
89 3300013296 Ga0157374_10000004 Ga0157374_10000004489 464
90 3300013296 Ga0157374_10175482 Ga0157374_101754821 464
91 3300013297 Ga0157378_10057409 Ga0157378_100574092 464
92 3300013297 Ga0157378_10122451 Ga0157378_101224512 464
93 3300013306 Ga0163162_10001194 Ga0163162_1000119417 464
94 3300014969 Ga0157376_10007685 Ga0157376_100076855 464
95 3300025246 Ga0209646_1003235 Ga0209646_10032353 464
96 3300025903 Ga0207680_10000096 Ga0207680_1000009632 464
97 3300025911 Ga0207654_10000240 Ga0207654_1000024018 464
98 3300025914 Ga0207671_10001586 Ga0207671_1000158626 464
99 3300025931 Ga0207644_10028480 Ga0207644_100284804 464
100 3300025934 Ga0207686_10089014 Ga0207686_100890141 464
101 3300025942 Ga0207689_10001706 Ga0207689_100017068 464
102 3300025944 Ga0207661_10089247 Ga0207661_100892472 464
103 3300026035 Ga0207703_10003309 Ga0207703_100033097 464
104 3300026088 Ga0207641_10000998 Ga0207641_1000099812 464
105 3300026089 Ga0207648_10010651 Ga0207648_100106512 464
106 3300028381 Ga0268264_10001066 Ga0268264_1000106619 464
107 3300031456 Ga0307513_10030078 Ga0307513_100300782 464
108 3300031507 Ga0307509_10168974 Ga0307509_101689742 464
109 3300031616 Ga0307508_10001325 Ga0307508_1000132511 464
110 3300041512 Ga0451853_3935750 Ga0451853_3935750_99_1493 464
111 3300042014 Ga0439457_005322 Ga0439457_005322_1806_3200 464
112 3300044658 Ga0466972_0000039 Ga0466972_0000039_99613_101007 464
113 3300044842 Ga0466957_0000530 Ga0466957_0000530_343_1770 464
114 3300046660 Ga0495625_0129691 Ga0495625_0129691_253_1671 464
115 3300049574 Ga0501038_0061924 Ga0501038_0061924_1387_2820 464
116 3300049581 Ga0501047_0026042 Ga0501047_0026042_2009_3478 464
117 3300049686 Ga0501257_015334 Ga0501257_015334_300_1703 464
118 3300053092 Ga0500583_0000198 Ga0500583_0000198_4917_6311 464
119 3300053092 Ga0500583_0000937 Ga0500583_0000937_4186_5580 464
120 3300053098 Ga0500650_0049927 Ga0500650_0049927_160_1554 464
121 3300053125 Ga0500618_004434 Ga0500618_004434_2678_4264 464
122 3300053139 Ga0500568_0000298 Ga0500568_0000298_6876_8324 464
123 3300053140 Ga0500573_0105081 Ga0500573_0105081_82_1515 464
124 3300053163 Ga0500639_055222 Ga0500639_055222_64_1497 464
125 3300053177 Ga0500636_0094951 Ga0500636_0094951_192_1625 464

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00941

FAD_binding_5

FAD binding domain in molybdopterin dehydrogenase

260

410

0.96

PF03450

CO_deh_flav_C

CO dehydrogenase flavoprotein C-terminal domain

417

518

0.96

PF01799

Fer2_2

[2Fe-2S] binding domain

95

169

0.91

PF00111

Fer2

2Fe-2S iron-sulfur cluster binding domain

17

86

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
3etr-assembly1.cif.gz_A crystal structure of xanthine oxidase in complex with lumazine 0.9476 2 154
1rm6-assembly1.cif.gz_C structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica 0.9141 2 157
8gy3-assembly1.cif.gz_B cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans 0.8968 2 160
1zxi-assembly1.cif.gz_F reconstituted co dehydrogenase from oligotropha carboxidovorans 0.894 214 456
7dqx-assembly1.cif.gz_B crystal structure of xanthine dehydrogenase family protein 0.892 205 454
ID Description Score Start End Superfamily
1sb3F01 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9551 2 82 3.10.20.30
3eubJ01 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9515 2 80 3.10.20.30
af_P22985_1_94_3.10.20.30 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9502 2 86 3.10.20.30
af_Q7G9P4_1_87_3.10.20.30 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9383 2 82 3.10.20.30
5y6qA01 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9367 2 82 3.10.20.30
ID Description Score Start End GO Terms
AF-A0A2A4RCF7-F1-model_v4 (2Fe-2S)-binding protein 0.9792 1 102 GO:0005506
GO:0016491
GO:0051537
AF-A0A357F392-F1-model_v4 (2Fe-2S)-binding protein 0.9695 1 96 GO:0005506
GO:0016491
GO:0051537
AF-A0A2A4RCF7-F1-model_v4 (2Fe-2S)-binding protein 0.9607 1 102 GO:0005506
GO:0016491
GO:0051537
AF-A0A2A5CP68-F1-model_v4 (2Fe-2S)-binding protein 0.9572 241 458 GO:0016491
GO:0071949
AF-A0A3N5PEW0-F1-model_v4 CO dehydrogenase flavoprotein C-terminal domain-containing protein 0.9514 301 461 GO:0016491
GO:0050660

Feature Viewer

pLDDT pTM Quality
89.31 0.88 High
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Predicted Structure (AlphaFold2)

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