| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010992 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121658 | Gp0160595 | Ga0139327 |
| Sample Name | ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43187297 |
| Sequencing Scaffolds | 12 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-55 | 1 |
| Not Available | 5 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Cwc Coastal Marshes |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → freshwater marsh → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Louisiana, Port Sulphur, Bay Sansbois east | |||||||
| Coordinates | Lat. (o) | 29.4542 | Long. (o) | -89.76993 | Alt. (m) | N/A | Depth (m) | 0 to .02 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004134 | Metagenome / Metatranscriptome | 451 | Y |
| F008068 | Metagenome / Metatranscriptome | 339 | Y |
| F011752 | Metagenome / Metatranscriptome | 287 | Y |
| F012534 | Metagenome / Metatranscriptome | 280 | N |
| F028664 | Metagenome | 191 | Y |
| F045718 | Metagenome | 152 | N |
| F050784 | Metagenome | 145 | Y |
| F050864 | Metagenome | 144 | Y |
| F056324 | Metagenome / Metatranscriptome | 137 | Y |
| F065729 | Metagenome / Metatranscriptome | 127 | N |
| F076877 | Metagenome | 117 | Y |
| F086333 | Metagenome / Metatranscriptome | 111 | Y |
| F086602 | Metagenome / Metatranscriptome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0139327_100042 | All Organisms → cellular organisms → Bacteria | 4374 | Open in IMG/M |
| Ga0139327_102141 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-55 | 1296 | Open in IMG/M |
| Ga0139327_103621 | Not Available | 1084 | Open in IMG/M |
| Ga0139327_104010 | All Organisms → Viruses → Predicted Viral | 1050 | Open in IMG/M |
| Ga0139327_105051 | Not Available | 973 | Open in IMG/M |
| Ga0139327_111869 | All Organisms → cellular organisms → Bacteria | 738 | Open in IMG/M |
| Ga0139327_112789 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 720 | Open in IMG/M |
| Ga0139327_116369 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 663 | Open in IMG/M |
| Ga0139327_124623 | Not Available | 580 | Open in IMG/M |
| Ga0139327_125546 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 573 | Open in IMG/M |
| Ga0139327_125804 | Not Available | 571 | Open in IMG/M |
| Ga0139327_132949 | Not Available | 527 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0139327_100042 | Ga0139327_1000422 | F012534 | MTQYEKDIIWAASQFLYDDLPEDYEKWSDEKFFKFLEDNAWQPFDNYSGQWLWAHIQDLAVSVRKYAQEN* |
| Ga0139327_102141 | Ga0139327_1021412 | F008068 | MEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGSEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFDQASEGSVSRPLQTIKPQHLMLVERELYMKLTKKSCLFGDFLDSLLLHNEDRRKVSELLSKVRRWIKNNKSYGLFFLTDVRGTEDFIDQTAAIFEIVVRAEVETEQDEPLLRFTIMKHPNIAKIDKKIEVAFEKGQPKRRRG* |
| Ga0139327_103621 | Ga0139327_1036211 | F050864 | VLRKGKTFLCSGILILLALALFSGCSLSEKTSAEPVMPEPLEFTYSVSVSAVPIQISSGNLHWHKELPNDSYTLEDMALEIYNFGDFDIPVAQLEITVDEDVSLFNIDQIIAGGARENIVLQPMMEGYDGGIHRVYVALLDDNGGVLYRNEGEDIGPLEPEPGTGSWHPMPS* |
| Ga0139327_104010 | Ga0139327_1040102 | F004134 | MTEHPTKDWEWEDTAEVAFQEWFNGEYGNFTFRNEWFFGDCEVEDVNTRKDLMTKWLHSAFLTGYNTGRCSKTDD* |
| Ga0139327_104010 | Ga0139327_1040103 | F065729 | MKKLEFRPVTITYVRTMMLTPTAETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPLVEVEWGEEDYD* |
| Ga0139327_105051 | Ga0139327_1050511 | F011752 | MTATTEDIVAHVREWSLDRAADKSISKTDARAILAEFYEWIEPDGDELEIVSLEPED* |
| Ga0139327_111869 | Ga0139327_1118691 | F086602 | PDSVTQWEQLQETDFDSEPFVFDKHADLPVEERPAYRLADTEMTINVWEKQKVVDTVTLRAIVVHDPQGEKPAERWPVVLLTDDRQIEARDLLNEFGDHWGQEFGHRIGKHDLYLDIVPQGYVLRTQRDDQGQLHREVEYDQTALFLSAWLRCLVFNLMSRFAQALGGEYAKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDRLNAKRTPLPWLNNLVVQFSIAQDEPLHPLT |
| Ga0139327_112789 | Ga0139327_1127892 | F050784 | MKELWTGPEFTRRNRGRMGIMGSIATLLGVAFAIVGIISEASLTLLGLYPTSWYLLAIASLVFSLGCWLGWAVGIYLHAKETGSNE* |
| Ga0139327_116369 | Ga0139327_1163691 | F056324 | MKGKAVILLMILSFMAAFSGCAGSKTYLMDVRYVPGEKAPPSSKTVGICPFEDARKDKGKETIGVRYRPGKNVDLLNLKGISLSQSVTQAVEDYFAEKGFEVTDCKGWDKSAEGLDGLPKDLSLVIGGKIDSFMVEAKSGVSITNIRYTVKLEALIGKIGERKVVTRTIESSPTRKKVGFDPDKVKAELN |
| Ga0139327_124623 | Ga0139327_1246232 | F045718 | MIGTDLKVTLSDGSEHTVTVSYSVACAWEDHHPGQAMEAMVRDVKFKQIAYLAYEALRKGGVTVKVWPQFIDTLGDVDFIPKARKKDKQPD* |
| Ga0139327_125546 | Ga0139327_1255461 | F086333 | MRMLRETESRVDFFKRGAGRNANEREKELKDNKMNIQPQNKLINNVKNRFKNIIDGILIRYDNYVYYKQLERFFKDNRTVLEKLKDKVNLAIACLSKNISKYVGSNNLDGHPHSLFIDGVKDGLLRRDE |
| Ga0139327_125804 | Ga0139327_1258041 | F076877 | MKEFLNCALLLSGETMKSFLERLAGGRCSFRGLGMGETAAPSLSKGMRRGKNSPVNKSLKKPAREPWN* |
| Ga0139327_132949 | Ga0139327_1329491 | F028664 | MKENSKILVGGQALRNLGHDRHTNDTDYLINDLSTKDAFITSDAVDYLNANGNKFFAEIFKLEAGNEQATPQSLFELKAYAFVQHCQNFNWAKADACEYDLKFLKREFGCRPQIVKKY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |